PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G060800.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

GRF

Protein Properties

Length: 229aa MW: 24887.1 Da PI: 8.8027

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G060800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.8	2.4e-25	118	162	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC ++v++++k+CErH+hrgr+rsrk++e+ Aqcoe7G060800.1.p 118 EPEPGRCRRTDGKKWRCAKDVVPDQKYCERHMHRGRNRSRKHVEN 162 69****************************************997 PP
2	QLQ	60.2	5.9e-21	52	88	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s FT Qlq+L++Q+l+yKy+aa+ PvP++L+++i+k Aqcoe7G060800.1.p 52 STFTFLQLQELEHQALIYKYMAAGIPVPSHLVLPIWK 88 67**********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.8E-10	52	88	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.931	53	88	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.9E-15	54	87	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.248	118	162	IPR014977	WRC domain
Pfam	PF08879	1.0E-21	119	161	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MEAQSPATKV ARIADSVCFE EMGTDEGGER KVVTSVGLDL GLGSNTIKHG KSTFTFLQLQ 60 ELEHQALIYK YMAAGIPVPS HLVLPIWKSL GNTYAGTGIY PTFLGCRGVC FDYRNSMEPE 120 PGRCRRTDGK KWRCAKDVVP DQKYCERHMH RGRNRSRKHV ENTSTQTVTI ASSSPSSNST 180 NVSVPFQLMS STPTTTISTN SIVSSGMGLS PNSVLQENGA FKTETSSL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026379112.1	2e-77	growth-regulating factor 10-like
Swissprot	Q6EPP9	6e-53	GRF10_ORYSJ; Growth-regulating factor 10
TrEMBL	A0A2G5E264	1e-169	A0A2G5E264_AQUCA; Uncharacterized protein (Fragment)
TrEMBL	A0A2G5E286	1e-170	A0A2G5E286_AQUCA; Uncharacterized protein
STRING	Aquca_013_00537.1	1e-170	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	9e-38	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Aqcoe7G060800.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]