PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G060800.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

GRF

Protein Properties

Length: 225aa MW: 24408.6 Da PI: 9.218

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G060800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.9	2.4e-25	114	158	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC ++v++++k+CErH+hrgr+rsrk++e+ Aqcoe7G060800.2.p 114 EPEPGRCRRTDGKKWRCAKDVVPDQKYCERHMHRGRNRSRKHVEN 158 69****************************************997 PP
2	QLQ	60.2	5.8e-21	48	84	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s FT Qlq+L++Q+l+yKy+aa+ PvP++L+++i+k Aqcoe7G060800.2.p 48 STFTFLQLQELEHQALIYKYMAAGIPVPSHLVLPIWK 84 67**********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.8E-10	48	84	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.931	49	84	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.7E-15	50	83	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.248	114	158	IPR014977	WRC domain
Pfam	PF08879	9.8E-22	115	157	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MEAQSPATKV ARIADSEMGT DEGGERKVVT SVGLDLGLGS NTIKHGKSTF TFLQLQELEH 60 QALIYKYMAA GIPVPSHLVL PIWKSLGNTY AGTGIYPTFL GCRGVCFDYR NSMEPEPGRC 120 RRTDGKKWRC AKDVVPDQKY CERHMHRGRN RSRKHVENTS TQTVTIASSS PSSNSTNVSV 180 PFQLMSSTPT TTISTNSIVS SGMGLSPNSV LQENGAFKTE TSSL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026379112.1	6e-78	growth-regulating factor 10-like
Swissprot	Q6EPP9	4e-53	GRF10_ORYSJ; Growth-regulating factor 10
TrEMBL	A0A2G5E268	1e-166	A0A2G5E268_AQUCA; Uncharacterized protein (Fragment)
STRING	Aquca_013_00537.1	1e-145	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	6e-38	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Aqcoe7G060800.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]