PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G065300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LBD
Protein Properties Length: 213aa    MW: 22713.6 Da    PI: 7.7375
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G065300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.22.1e-41211211100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkC+k+C++apyf +eq + +fa+vhk+FGasnv+kll +lp+++r da+ +++yeA ar+rdPvyG+vg+i++lqqq+ +l+
  Aqcoe7G065300.1.p  21 PCGACKFLRRKCVKGCIFAPYFDSEQgSTHFAAVHKIFGASNVSKLLLRLPPHKRLDAVVTICYEALARIRDPVYGCVGHIFALQQQVVNLQ 112
                        7***********************9988**************************************************************** PP

             DUF260  92 aelallkee 100
                        aela ++++
  Aqcoe7G065300.1.p 113 AELAFVQAH 121
                        ****99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.9920122IPR004883Lateral organ boundaries, LOB
PfamPF031957.8E-4021119IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MNGNSNVNGA GNGGGGGNLG PCGACKFLRR KCVKGCIFAP YFDSEQGSTH FAAVHKIFGA  60
SNVSKLLLRL PPHKRLDAVV TICYEALARI RDPVYGCVGH IFALQQQVVN LQAELAFVQA  120
HLSTFELSSS QAMSPALANI YDPNSSTTVS TSNLPTNFVS DPQQLQQTSD TTAGYCSLND  180
QQPVDDGDLH ALAREFVSRY LPGVRFRPSS SC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-39171157104LOB family transfactor Ramosa2.1
5ly0_B4e-39171157104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867574.12e-86LOB domain-containing protein 19-like
RefseqXP_015902800.12e-86LOB domain-containing protein 19-like
SwissprotO813221e-66LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A2G5E2K81e-155A0A2G5E2K8_AQUCA; Uncharacterized protein
STRINGAquca_013_00580.11e-156(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.11e-59LOB domain-containing protein 19