PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G078200.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NAC
Protein Properties Length: 359aa    MW: 41832.7 Da    PI: 6.6996
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G078200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.44.4e-5671361129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPtdeelv++yL+kk+++++++l +vik++d+yk+ePwdL++  ++ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+d
  Aqcoe7G078200.2.p   7 VPPGFRFHPTDEELVDYYLRKKIASRRIDL-DVIKDIDLYKIEPWDLQEkcRIGTeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRD 97 
                        69****************************.9***************953444442556********************************* PP

                NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        k+++s k++l+g++ktLvfykgrap+g+k+dW+mheyrle
  Aqcoe7G078200.2.p  98 KAIYS-KHNLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                        *****.899*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-625156IPR003441NAC domain
PROSITE profilePS5100560.3417156IPR003441NAC domain
PfamPF023651.0E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MNTFSHVPPG FRFHPTDEEL VDYYLRKKIA SRRIDLDVIK DIDLYKIEPW DLQEKCRIGT  60
EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKAI YSKHNLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GPPQEEGWVV CRVFKKRLTT VRKMIDHDSP CWYDEQVSFM  180
PDLESPKRVI QSDMAYRHPY LCKQELELQY HMPHESFLQL PQLESPKFPH SAASASCNSM  240
VAYSLDVNQG STIQSSSLTQ EEQMQQNQQQ NMNSYYSNSN NEQAVDQVTD WRVLDKFVAS  300
QLSHEEACKE SNYNSGNTVF HVSDHMNNIL ARQSNKQELL TSDYASTSTS SCQIDLWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-51615714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264210.10.0PREDICTED: NAC domain-containing protein 7
SwissprotQ9FWX21e-155NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A2G5E2W20.0A0A2G5E2W2_AQUCA; Uncharacterized protein
STRINGAquca_013_00692.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-135NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]