PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G078300.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

YABBY

Protein Properties

Length: 180aa MW: 19908.5 Da PI: 8.0344

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G078300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	97.9	2.3e-30	10	130	2	123
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaa.eshldeslkeelleelkveeenlksnvekeesa 92 d+ s seq+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhCt+llsvn++ + a + h+++s+ + ++ l+ + + ++++ Aqcoe7G078300.1.p 10 DHLSPSEQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLLPTGAnQLHFGHSFFSPTHNLLEEIPSPPPNLLIDQSNP 101 67899*******************************************99988766551568999999988877777777766666766666 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrq 123 + + + + + ++e+pr+p ++rP +r Aqcoe7G078300.1.p 102 NDHLMM-PVIRGGTDELPRQPAANRPR-RRD 130 666655.55677888999999999974.444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.4E-29	14	68	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MSSSSAFSLD HLSPSEQLCY VHCNFCDTVL AVSVPCSSLF KTVTVRCGHC TNLLSVNMRG 60 LLLPTGANQL HFGHSFFSPT HNLLEEIPSP PPNLLIDQSN PNDHLMMPVI RGGTDELPRQ 120 PAANRPRRRD RESISLQPFH QGRDPTYQGR KSRYNSQGSF QCSCKELGPL STHPLWSHA*

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC139089	3e-51	KC139089.1 Vitis pseudoreticulata transcription factor YABBY1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010264212.1	1e-69	PREDICTED: protein YABBY 4-like
Swissprot	Q01JG2	5e-39	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	5e-39	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A2G5E2Y4	1e-129	A0A2G5E2Y4_AQUCA; Uncharacterized protein
STRING	Aquca_013_00693.1	1e-130	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	2e-28	YABBY family protein

Link Out ? help Back to Top
Phytozome	Aqcoe7G078300.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]