PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G095400.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

MYB_related

Protein Properties

Length: 101aa MW: 11330.7 Da PI: 4.5248

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G095400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.8	4.4e-07	12	61	4	48
S-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqkyl 48 WT+eE +++ a ++ + W+ +ar++g g++ +++k+ + k++ Aqcoe7G095400.1.p 12 WTEEENQKFESALEEAMKSfdyedYWNCVAREVGGGKSVEDVKEQFAKLK 61 ***************99***********************998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.203	7	65	IPR017884	SANT domain
SuperFamily	SSF46689	2.56E-7	11	69	IPR009057	Homeodomain-like
CDD	cd00167	6.86E-4	12	61	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MASAGTSSVS IWTEEENQKF ESALEEAMKS FDYEDYWNCV AREVGGGKSV EDVKEQFAKL 60 KRDVKKIDDG RVPVPNYKPL SECLIAVAKA RMSENDYEQK *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009603278.1	1e-16	PREDICTED: protein RADIALIS-like 1
Refseq	XP_016451407.1	1e-16	PREDICTED: protein RADIALIS-like 1
Refseq	XP_016451408.1	1e-16	PREDICTED: protein RADIALIS-like 1
Refseq	XP_018627017.1	1e-16	PREDICTED: protein RADIALIS-like 1
Refseq	XP_019242704.1	1e-16	PREDICTED: protein RADIALIS-like 1
TrEMBL	A0A2G5E3W3	3e-67	A0A2G5E3W3_AQUCA; Uncharacterized protein
STRING	Aquca_013_00851.1	5e-68	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.2	2e-17	RAD-like 6

Link Out ? help Back to Top
Phytozome	Aqcoe7G095400.1.p