PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G106400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 652aa    MW: 74676.1 Da    PI: 9.964
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G106400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.8e-08551569625
                        -SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                        Crf+a+ G C yGd+CkF H
  Aqcoe7G106400.1.p 551 CRFYAQ-GRCTYGDTCKFLH 569
                        ******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689062.75E-792137No hitNo description
Gene3DG3DSA:1.10.720.305.3E-1092138IPR003034SAP domain
PfamPF020373.8E-10103137IPR003034SAP domain
PROSITE profilePS5080010.026103137IPR003034SAP domain
SMARTSM005138.3E-5103137IPR003034SAP domain
SMARTSM003563.0E-4545571IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.732545572IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-7546570IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-6550569IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-6551572IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5620644IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.014620647IPR000571Zinc finger, CCCH-type
SMARTSM003560.045621646IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4623644IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MAKSESEVCN EHVEKEFTED EDSSTECCVT DDSEDDPTYD ILEKTRSSLS KMSLKKSKSR  60
TSKVKDSTGK TKLDFEEVKM AELDEVDAKS FENVEKIIQA GQLEKLKIDQ CKVYLRKHGL  120
RLTGNKDVLI ERIREHLGII NGGGEQKYPA STFVLNCKGD ACTGDVVMFE QNVYEMYNVA  180
SRSATGPPCG TRIVAGRIVK ESYGAAKQQH TFTIEVLWSK GMKPLPPLHP LLIKGRNLYR  240
LKTLRQKWTD EVERSRVLLE KHSRGSLARS SRETRVQKKE MRKVLREQRG TRINTIHKEN  300
QHPQPNPVQP NNCRQETIQT QNPHKPVDSA IQPNRILTQI NEQRNSRTQP NLIKPQMNNI  360
PGWQTSSVNL IKIQISNASQ RWWGNITEVD KHENTAKDHH KQPATSNVAS RNPLQSPSRQ  420
HVDIAKDHQS YAQSYPSLNS PPRSPLHHFP RKDQSGHIQN NPNGYVHKQP LASSDIPHRS  480
PMREPAHIAN DHQSYVQSYP SLNCRPQSPL HHLSNKDQLG HIQKNDYVRG QPLPSSPPRS  540
PLRAPTLQQQ CRFYAQGRCT YGDTCKFLHE YRREQSLHVP PRSPLRHFPG RDNPCPVQQY  600
RSGYIHKQPS SSLTSPPRSP MRQQVCHYFP DGNCRRGNYC KFLHVNRREQ R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026430681.11e-136zinc finger CCCH domain-containing protein 62-like
TrEMBLA0A2G5C8F70.0A0A2G5C8F7_AQUCA; Uncharacterized protein
STRINGAquca_076_00023.10.0(Aquilegia coerulea)