PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G115400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 667aa    MW: 74008 Da    PI: 6.2902
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G115400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-08551599348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        +WT  E  +lv++v ++G g+W+ I +        Rt  ++k++w+++l
  Aqcoe7G115400.1.p 551 AWTLSEVIKLVEGVSKYGAGRWSEIKKVAFasyAYRTSVDLKDKWRNLL 599
                        7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.303544603IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-13546606IPR009057Homeodomain-like
SuperFamilySSF466895.93E-16546619IPR009057Homeodomain-like
SMARTSM007171.9E-9548601IPR001005SANT/Myb domain
CDDcd116605.98E-19550600No hitNo description
PfamPF002494.0E-7551599IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MEKLAEVQLN EEQRIDESFD SNISSPALSP KQIANPVVYK LVRVEGDGRL VPATDDEVME  60
VENLFEEEKV EARSIVDTGQ VEVCIPDEES PSVEAKTEVS EGKSQGEDTK VDAEKLNARL  120
EYIGVMLQQV KQEENLRLSN ASPKHSSTLM TVDGQCSDQR ENLSAVEEKL QTNHSLKEGP  180
LRTPILNDSS NNQLVSEEIS LKSTDGLAVG GSSASVPASC SSSMPDFSRI KGEICLDNQT  240
VRELQETFRA TFGRETTVKD KLWLKRRIAM GLTNSCDVST TTFTIKDNVL VRTKAKDTQS  300
VMEICKNTSQ TNEMVYDSCK DVATIPAVKV GDQQVLFCKR LRKPEVDNEC KEDVCTEQSA  360
SKRVRKPTKR YIEELSESDT RECAGRCESS TKHSGNGHFS PKSIISPVCV FSTDETALIT  420
RQDSFGGSGV QVPYVSRMRR GRPRENFMSI MQQYHPNGMG MSVDVAKSAL GARISQQDNE  480
TGEKNWKDRA TPKHNQQQMV AKTEPEKENV VKCIDEPETV YFDNIDSGDN SDCNLTSPTS  540
KYGVRRKHHR AWTLSEVIKL VEGVSKYGAG RWSEIKKVAF ASYAYRTSVD LKDKWRNLLR  600
ASFAQGSNDK GMRNSRKHGS MPIPAPILLR VRQLAEKDSG GTPDLSSSKF IGCSGRSVLD  660
SRSGYL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261948.10.0PREDICTED: uncharacterized protein LOC104600603 isoform X1
RefseqXP_010261949.10.0PREDICTED: uncharacterized protein LOC104600603 isoform X1
TrEMBLA0A2G5C8V50.0A0A2G5C8V5_AQUCA; Uncharacterized protein
STRINGAquca_076_00106.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-117TRF-like 6