PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G116700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NF-YA
Protein Properties Length: 331aa    MW: 36576.6 Da    PI: 8.4666
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G116700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1025.8e-32178234158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep++VN+KQy++Il+RR++Rakle+++kl +k+rkpylheSRh hAl+R Rg+gGrF
  Aqcoe7G116700.1.p 178 EEPIFVNPKQYHGILRRRESRAKLEAQNKL-IKARKPYLHESRHLHALKRVRGNGGRF 234
                        69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
SMARTSM005211.4E-37176237IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.712177237IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.0E-26179234IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.0E-22180202IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.0E-22211234IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MRNISNKKSN QPSVPLMSSA VISCQSWLNS SESQLPKSSL SNAQSLNTNS SHQHLYKDRH  60
SSHHLQEQDS SSTQSTGQSH LEVPAMDGDN PHRHSGCEET YEKRVESHMK SVLSLGTPDF  120
IFPTSQVDYT HSVGRLPYPC PDPYFGGLLA PYGSQMIHPS MLGMAFARVP LPLDPAEEEP  180
IFVNPKQYHG ILRRRESRAK LEAQNKLIKA RKPYLHESRH LHALKRVRGN GGRFLNTKKS  240
QESEPTSNDG QNDSEAASQV ESKVLRSETS ITGGSTASCS ETTSVSDGYN TLQMSDRRYS  300
NYSSHMNGTL LGEGSSIMCN GSQYRVPVIR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-20178238262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261975.14e-92PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
TrEMBLA0A2G5C8W80.0A0A2G5C8W8_AQUCA; Uncharacterized protein
STRINGAquca_076_00118.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-53nuclear factor Y, subunit A3