PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G121500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 259aa    MW: 29641 Da    PI: 5.2891
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G121500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.51e-1250140298
                        EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                        + + + s+ ++  +l +p  fa+++   +  sk ++l++++g++W+v + ++ +   + +t+GWk F+ +n L++   +vF+l++  efel+
  Aqcoe7G121500.1.p  50 VVQIKVSSLTTPFQLNVPAAFAKDNF--PCFSKHVILRNREGKKWRVLFYFDFRL--HSFTNGWKAFALDNFLEVDGHCVFELVD--EFELL 135
                        55666677788899********9996..447789***************555554..679**********************976..88888 PP

                        EEEE- CS
                 B3  94 vkvfr 98 
                          ++r
  Aqcoe7G121500.1.p 136 CYIYR 140
                        88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-2145142IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-1946140IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-1547140No hitNo description
PfamPF023621.2E-1049140IPR003340B3 DNA binding domain
PROSITE profilePS5086312.57649142IPR003340B3 DNA binding domain
SMARTSM010194.3E-949142IPR003340B3 DNA binding domain
SuperFamilySSF477691.35E-10201254IPR013761Sterile alpha motif/pointed domain
Gene3DG3DSA:1.10.150.501.4E-10201254IPR013761Sterile alpha motif/pointed domain
PfamPF005363.5E-12202254IPR001660Sterile alpha motif domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MKKNEGEVID IQEEEEEEEE KVMPDKELSI CRDAGRHAIH LFTSIYPHFV VQIKVSSLTT  60
PFQLNVPAAF AKDNFPCFSK HVILRNREGK KWRVLFYFDF RLHSFTNGWK AFALDNFLEV  120
DGHCVFELVD EFELLCYIYR VNDKKGLLED TETTGTKRSR MIYEESSKGE EMVVKPIPEI  180
PDDSSCATKR KLLPTASDQG KSVDSLLKSL SLEKYSDTFH PEEIDIAALK LMTEEELKFL  240
GVPMGPKKKI LQALNPKA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-08B3 family protein