PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G142700.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bHLH

Protein Properties

Length: 366aa MW: 40321.6 Da PI: 5.1409

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G142700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.7	4.2e-08	276	316	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P + K++ a++L +A +Y+k L Aqcoe7G142700.1.p 276 ARQRRERISERIRILQRLVPGgN------KMDTASMLDEAANYLKFL 316 69****************955......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.964	267	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-14	273	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-12	273	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-11	275	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-5	276	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.41E-4	290	321	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MASNTGLVKS GCGTTWGEGL TSGTPLINRL YSTSPISSLM PDFDNKMPVT NGVEGDTVAA 60 DSFESLDCLL SATNSNTDTS VEDDGISMLF SDCRNLWNFN SNSAISSGES ENNGAKDDDN 120 EACPQVSKPN EGSRCYTNPS FNHVSNSPDT WPSSSSKRNR EQEEIKMPEN YRCFELFQTD 180 SSTNTEGGFQ LISENPSKAK KPRLEKQQKT SNINFQHPNS SVSSSLDEPD NEAIAQVKEM 240 IYRAAVFRPV SLDLDVVEKP KRKNVRISSD PQTVAARQRR ERISERIRIL QRLVPGGNKM 300 DTASMLDEAA NYLKFLRSQV KALETLGHKL GSVSSSTSTN LSFPSLPFNH NFTMQPFFPF 360 QNPNP*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MASNTGLVKS GCGTTWGEGL TSGTPLINRL YSTSPISSLM PDFDNKMPVT NGVEGDTVAA  60
DSFESLDCLL SATNSNTDTS VEDDGISMLF SDCRNLWNFN SNSAISSGES ENNGAKDDDN  120
EACPQVSKPN EGSRCYTNPS FNHVSNSPDT WPSSSSKRNR EQEEIKMPEN YRCFELFQTD  180
SSTNTEGGFQ LISENPSKAK KPRLEKQQKT SNINFQHPNS SVSSSLDEPD NEAIAQVKEM  240
IYRAAVFRPV SLDLDVVEKP KRKNVRISSD PQTVAARQRR ERISERIRIL QRLVPGGNKM  300
DTASMLDEAA NYLKFLRSQV KALETLGHKL GSVSSSTSTN LSFPSLPFNH NFTMQPFFPF  360
QNPNP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	281	RQRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010654570.1	1e-133	PREDICTED: transcription factor bHLH87
Refseq	XP_010654572.1	1e-133	PREDICTED: transcription factor bHLH87
Refseq	XP_019077817.1	1e-133	PREDICTED: transcription factor bHLH87
Swissprot	Q8S3D2	2e-83	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A2G5F956	0.0	A0A2G5F956_AQUCA; Uncharacterized protein
STRING	Aquca_001_00189.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	5e-65	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aqcoe7G142700.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]