PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G143600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 409aa    MW: 45060.4 Da    PI: 7.1035
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G143600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-08152172526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         C++f++ G Ck+Gd C +aHg
  Aqcoe7G143600.1.p 152 ACPDFRK-GNCKRGDACEYAHG 172
                        7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.5E-6147173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.92148174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-5152174IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6152172IPR000571Zinc finger, CCCH-type
SMARTSM0035614182205IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.559182206IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MLMIGEGNRA NPTVSIPSWS VYDDPMVDMI SSSPILPVSG VISSAAANNN NVISDVGGGG  60
GDYSPFLLAE ALTALQRYLP SNEVDSDTDI FGYRESDIPI DAYSCDEFRM YEFKVRRCAR  120
GRSHDWTECP YAHPGEKARR RDPRKFHYSG TACPDFRKGN CKRGDACEYA HGVFECWLHP  180
ARYRTQPCKD GTSCRRRVCF FAHTPDQLRV LAAQQQSPRI ITESPPSYDG SPLRHAIDSY  240
YANTTKGSPT STLFTPPISP PSDSPPMSPN TQSLSRPVGP NSMNDIVASL RQLQLNKVKS  300
APPLRAAVQI GSGFSPRGIS SLRPVFNSLP NTPTQTTNRS GIGKLNFWDS PDSQLLLEEP  360
VMDRVESGRE LRAKMFQKLS TENSLERDDR VDSSGSGPDV DWVSELVK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244375.11e-173PREDICTED: zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G21e-123C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2G5F9A60.0A0A2G5F9A6_AQUCA; Uncharacterized protein
STRINGAquca_001_00197.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-121C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]