PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G149100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

MYB_related

Protein Properties

Length: 364aa MW: 39090.6 Da PI: 7.5453

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G149100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.7	5.4e-13	120	164	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++lG+g+W+ Iar + Rt+ q+ s+ qky Aqcoe7G149100.1.p 120 PWTEEEHRLFLLGLQKLGKGDWRGIARNFVISRTPTQVASHAQKY 164 8***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.891	113	169	IPR017930	Myb domain
SuperFamily	SSF46689	1.35E-16	114	170	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-18	116	168	IPR006447	Myb domain, plants
SMART	SM00717	9.9E-12	117	167	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.3E-12	117	163	IPR009057	Homeodomain-like
Pfam	PF00249	2.5E-11	120	164	IPR001005	SANT/Myb domain
CDD	cd00167	1.15E-9	120	165	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MTRRCSHCSN NGHNSRTCPT TRGGGGGGGG GGVKLFGVRL TDGGSIIKKS ASVGNLSHYY 60 SSSSCSASPN PSSPSSDPVI GGTNNTTTTT TAEGYVSDDP AHTSCSSNCR VTEQRKKGTP 120 WTEEEHRLFL LGLQKLGKGD WRGIARNFVI SRTPTQVASH AQKYFIRQSN STRRKRRSSL 180 FDMVPEMSIN TQTVPEEPHG MSQVTEDENV NQLPNLHLSL DSLDRECEPM EATSHNNPVE 240 AEETMPCSDS TPIIPAFLPT YLPVSFPFWP PNLVPAEEEK GLETSHHQVL KPTAILSKDP 300 VNVDELVCMS KLTLGAAVPD RIEPSPLSLK LVGSSSRQSA FHANQPIGRS ALSKRDGNAI 360 PAA*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MTRRCSHCSN NGHNSRTCPT TRGGGGGGGG GGVKLFGVRL TDGGSIIKKS ASVGNLSHYY  60
SSSSCSASPN PSSPSSDPVI GGTNNTTTTT TAEGYVSDDP AHTSCSSNCR VTEQRKKGTP  120
WTEEEHRLFL LGLQKLGKGD WRGIARNFVI SRTPTQVASH AQKYFIRQSN STRRKRRSSL  180
FDMVPEMSIN TQTVPEEPHG MSQVTEDENV NQLPNLHLSL DSLDRECEPM EATSHNNPVE  240
AEETMPCSDS TPIIPAFLPT YLPVSFPFWP PNLVPAEEEK GLETSHHQVL KPTAILSKDP  300
VNVDELVCMS KLTLGAAVPD RIEPSPLSLK LVGSSSRQSA FHANQPIGRS ALSKRDGNAI  360
PAA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021889228.1	1e-146	transcription factor MYBS3
Swissprot	Q7XC57	6e-96	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A2G5F9Q9	0.0	A0A2G5F9Q9_AQUCA; Uncharacterized protein
STRING	Aquca_001_00262.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	2e-76	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Aqcoe7G149100.1.p

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]