PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G157600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family HD-ZIP
Protein Properties Length: 842aa    MW: 92073.6 Da    PI: 6.3298
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G157600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181876357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Aqcoe7G157600.1.p 18 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                       5679*****************************************************97 PP
2START169.22.8e-531643722205
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++ +++++v+ +g  g++
  Aqcoe7G157600.1.p 164 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCPGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRVVDVMNVLPTGtgGTI 254
                        789*******************************************************.8888888888*********************** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++l+a+++l++ Rdf+ +Ry+  l++g++v++++S++s+q  p+    +++vRae+lpSg+l++p+++g+s +++v+h+dl+ +++++
  Aqcoe7G157600.1.p 255 ELLYMQLYAPTTLASaRDFWLLRYTSVLEDGSLVVCERSLSSTQGGPSmplVQHFVRAEMLPSGYLVRPCEGGGSIIHIVDHMDLEPSSVPE 346
                        ***********************************************999999*************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXXX CS
              START 180 llrslvksglaegaktwvatlqrqce 205
                        +lr+l++s ++ ++kt++a+l+++++
  Aqcoe7G157600.1.p 347 VLRPLYESPTVLAQKTTMAALRQLRQ 372
                        **********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-18776IPR009057Homeodomain-like
PROSITE profilePS5007115.7421377IPR001356Homeobox domain
SMARTSM003891.2E-151581IPR001356Homeobox domain
SuperFamilySSF466895.13E-171781IPR009057Homeodomain-like
CDDcd000869.37E-171878No hitNo description
PfamPF000463.0E-161976IPR001356Homeobox domain
CDDcd146861.53E-670109No hitNo description
PROSITE profilePS5084824.064154354IPR002913START domain
CDDcd088754.59E-77158374No hitNo description
SuperFamilySSF559611.22E-35163373No hitNo description
Gene3DG3DSA:3.30.530.201.3E-20163369IPR023393START-like domain
SMARTSM002343.7E-38163373IPR002913START domain
PfamPF018527.4E-51164372IPR002913START domain
PfamPF086701.0E-52698840IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MMAITSCKDG KGQMDNGKYV RYTPEQVEAL ERLYHECPKP SSIRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQAVNRKL SAMNKLLMEE NDRLQKQVSQ LVYENGYFRQ  120
QPQTTAAALA TTDTSCESVV TSGQHHLTPQ HPPRDASPAG LLSIAEETLT EFLSKATGTA  180
VEWVQMPGMK PGPDSIGIIA ISHGCPGVAA RACGLVGLEP TRVAEILKDR PSWFRDCRVV  240
DVMNVLPTGT GGTIELLYMQ LYAPTTLASA RDFWLLRYTS VLEDGSLVVC ERSLSSTQGG  300
PSMPLVQHFV RAEMLPSGYL VRPCEGGGSI IHIVDHMDLE PSSVPEVLRP LYESPTVLAQ  360
KTTMAALRQL RQIALEASQS TVTGWGRRPA ALRALSQRLS RGFNEALNGF TDDGWSPMGS  420
DGMDDVTILV NSSPGKMSGV NIAYGNGFPA VTSGILCAKA SMLLQNVPPP ILLRFLREHR  480
SEWADSNIDA YSAAALKSGP CILPGSRVGG FGGQVILPLA HTIEHEEFLE VIKLESIGHC  540
QEDTLMSRDM FLLQLCSGVD ENAVGTCAEL VFAPIDSSFA DEAPLLPSGF RIIPLDFGVD  600
ASSPNRTLDL ASALEIGPAG NKVPGDYSGS CGSMRSVMTI AFQFAFESHL QENVASMARQ  660
YLRSIISSVQ RVALALSPSL LSPHSGLRPP PGTPEARTLA RWICQSYRCY LGVELLKPTT  720
DGSESNLKTL WHHSDAIMCC SLKALPVFTF ANQAGLDMLE TTLVALQDIT LEKIFDDHGR  780
KTLCSEFPQI MQQGFACLQG GICLSSMGRP VSYERAVAWK VLNEEENAHC ICFMFVNWSF  840
V*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267183.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
RefseqXP_010267184.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2G5F9Q30.0A0A2G5F9Q3_AQUCA; Uncharacterized protein
STRINGAquca_001_00306.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]