PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G157600.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family HD-ZIP
Protein Properties Length: 829aa    MW: 90461.9 Da    PI: 6.3293
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G157600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-181876357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Aqcoe7G157600.2.p 18 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                       5679*****************************************************97 PP
2START169.22.8e-531513592205
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++ +++++v+ +g  g++
  Aqcoe7G157600.2.p 151 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCPGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRVVDVMNVLPTGtgGTI 241
                        789*******************************************************.8888888888*********************** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++l+a+++l++ Rdf+ +Ry+  l++g++v++++S++s+q  p+    +++vRae+lpSg+l++p+++g+s +++v+h+dl+ +++++
  Aqcoe7G157600.2.p 242 ELLYMQLYAPTTLASaRDFWLLRYTSVLEDGSLVVCERSLSSTQGGPSmplVQHFVRAEMLPSGYLVRPCEGGGSIIHIVDHMDLEPSSVPE 333
                        ***********************************************999999*************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXXX CS
              START 180 llrslvksglaegaktwvatlqrqce 205
                        +lr+l++s ++ ++kt++a+l+++++
  Aqcoe7G157600.2.p 334 VLRPLYESPTVLAQKTTMAALRQLRQ 359
                        **********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-18776IPR009057Homeodomain-like
PROSITE profilePS5007115.7421377IPR001356Homeobox domain
SMARTSM003891.2E-151581IPR001356Homeobox domain
SuperFamilySSF466895.13E-171781IPR009057Homeodomain-like
CDDcd000869.13E-171878No hitNo description
PfamPF000462.9E-161976IPR001356Homeobox domain
CDDcd146861.50E-670109No hitNo description
PROSITE profilePS5084824.064141341IPR002913START domain
CDDcd088755.63E-77145361No hitNo description
SMARTSM002343.7E-38150360IPR002913START domain
SuperFamilySSF559611.19E-35150360No hitNo description
Gene3DG3DSA:3.30.530.201.2E-20150356IPR023393START-like domain
PfamPF018527.2E-51151359IPR002913START domain
PfamPF086701.0E-52685827IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MMAITSCKDG KGQMDNGKYV RYTPEQVEAL ERLYHECPKP SSIRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQAVNRKL SAMNKLLMEE NDRLQKQVSQ LTAAALATTD  120
TSCESVVTSG QHHLTPQHPP RDASPAGLLS IAEETLTEFL SKATGTAVEW VQMPGMKPGP  180
DSIGIIAISH GCPGVAARAC GLVGLEPTRV AEILKDRPSW FRDCRVVDVM NVLPTGTGGT  240
IELLYMQLYA PTTLASARDF WLLRYTSVLE DGSLVVCERS LSSTQGGPSM PLVQHFVRAE  300
MLPSGYLVRP CEGGGSIIHI VDHMDLEPSS VPEVLRPLYE SPTVLAQKTT MAALRQLRQI  360
ALEASQSTVT GWGRRPAALR ALSQRLSRGF NEALNGFTDD GWSPMGSDGM DDVTILVNSS  420
PGKMSGVNIA YGNGFPAVTS GILCAKASML LQNVPPPILL RFLREHRSEW ADSNIDAYSA  480
AALKSGPCIL PGSRVGGFGG QVILPLAHTI EHEEFLEVIK LESIGHCQED TLMSRDMFLL  540
QLCSGVDENA VGTCAELVFA PIDSSFADEA PLLPSGFRII PLDFGVDASS PNRTLDLASA  600
LEIGPAGNKV PGDYSGSCGS MRSVMTIAFQ FAFESHLQEN VASMARQYLR SIISSVQRVA  660
LALSPSLLSP HSGLRPPPGT PEARTLARWI CQSYRCYLGV ELLKPTTDGS ESNLKTLWHH  720
SDAIMCCSLK ALPVFTFANQ AGLDMLETTL VALQDITLEK IFDDHGRKTL CSEFPQIMQQ  780
GFACLQGGIC LSSMGRPVSY ERAVAWKVLN EEENAHCICF MFVNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267183.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
RefseqXP_010267184.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2G5F9R60.0A0A2G5F9R6_AQUCA; Uncharacterized protein
STRINGAquca_001_00306.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]