PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G161000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 186aa    MW: 21603.2 Da    PI: 8.8156
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G161000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.29.4e-1165152178
                        EEEE-..-HHHHT.T-EE--HHH.HTT...........---....--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                 B3   1 ffkvltpsdvlks.grlvlpkkfaeeh...........ggkke..esktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                        f+k lt sd+ k+ grl + +kf+ +            +      +++++ ++d +g +s ++k+  +k ++ +vl +GW++F ++++Lk++
  Aqcoe7G161000.1.p  65 FIKLLTESDTKKTqGRLAIRRKFVVSQilpilklkegdK---LltRGIEVLVYDIRGnKSSKMKF--SKWKKVFVLISGWRKFYQEHDLKAN 151
                        8999*99*9999889********99999***97775532...244999******88868999999..677777*****************87 PP

                        - CS
                 B3  78 D 78 
                        +
  Aqcoe7G161000.1.p 152 E 152
                        5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.2E-1263165IPR015300DNA-binding pseudobarrel domain
CDDcd100172.50E-963152No hitNo description
Gene3DG3DSA:2.40.330.101.3E-1064162IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-665163IPR003340B3 DNA binding domain
PfamPF023628.9E-865152IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MNYDSLEEEE EEVIAAAKVL VGMKNEDLDT QTALALHNLR IQIVENMLPP IEKLSDLVEG  60
WSKCFIKLLT ESDTKKTQGR LAIRRKFVVS QILPILKLKE GDKLLTRGIE VLVYDIRGNK  120
SSKMKFSKWK KVFVLISGWR KFYQEHDLKA NEDEVHLWAC RDVRTKKLCF AITWHKVFRP  180
DEDVN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5F9U51e-133A0A2G5F9U5_AQUCA; Uncharacterized protein
STRINGAquca_001_00335.11e-133(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.13e-11B3 family protein