PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G165300.6.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 704aa    MW: 81163.3 Da    PI: 6.5643
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G165300.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.48.9e-2782166290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        fY eYA++vGF +rk+  ++sk n+e++ rt+vCs+eg + ++k+      ++r++tr +Cka++kvk+ ++gkw ++k+++eHnHel 
  Aqcoe7G165300.6.p  82 FYGEYARHVGFGIRKRFIRRSKLNNEVIGRTYVCSREGIKLSRKEV----DHPRPTTRLDCKAMMKVKRYENGKWIIIKFVKEHNHELY 166
                        9****************************************99877....99***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.6E-2482167IPR004330FAR1 DNA binding domain
PfamPF105519.7E-28281374IPR018289MULE transposase domain
PROSITE profilePS509669.792568604IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-5578603IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-4579606IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MDQCGDSAAS EDGSCPVLDD IDENYTVRDC STVEANIFSD EVEEDFSIDE PIAVDPSAAE  60
NANGLDPYIG REFESEHATY IFYGEYARHV GFGIRKRFIR RSKLNNEVIG RTYVCSREGI  120
KLSRKEVDHP RPTTRLDCKA MMKVKRYENG KWIIIKFVKE HNHELYPHSA CIFESPLINT  180
YNEAPKSAEI DVSKTILLAT KRGRPKKVQS TEKNCRNLFE NEQREPLSIG DAQTLYDYFM  240
RAQVSNPRFF YAMELDEQQR MRNVFWADTK ARVDYAHFGD VVTFDTTCLT NKYETKIVSF  300
VGVNHHGQSV LLGCALVTDE TKASFLWVFR TWLTVMQGGP PKAIITDHHR TINLAIAEAF  360
PQTCHRICLG HVMRRVPEKL GKACTNNERF IYKFEKCVYD SLTVEEFERR WKKLVESNGL  420
LDHEWIQTLF EDRNQWVPVY LKDIFFAGMS TSRQGESVKS FFDDYVNEKT SLKDFIDQIE  480
LALQRSYSAE EKADLETYRR TTSLITGSPY EAQMASVYTM DIFKKFQEEI LLIPSCTAVR  540
VREEGAEVNY VVKELRIKRN GLRGVIDYEV LFNGYETKVC CVCRSFEFKG YLCRHAMVVL  600
FAVGVFDIPS RYILKRWTWD AKNIDICNGS QDSGPEFVAK CFSDLRADSL KLAEESSLTK  660
ERYRTAKIFL KEALMKVASM EKVPVSDPNT KSKEAQRITW QQN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277289.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_010277290.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_010277291.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_010277292.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_010277293.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_010277294.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4-like
TrEMBLA0A2G5FA700.0A0A2G5FA70_AQUCA; Uncharacterized protein
STRINGAquca_001_00371.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-150FAR1 family protein