PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G166000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 775aa    MW: 89590.1 Da    PI: 8.5407
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G166000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.14.4e-2163149190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +fYn+YAke+GFsvrk ++k++  n+ei+++++vC k+ k +  +++  +++r+r   r gCkakl v k+ +gk+ vt +++ HnH+l+
  Aqcoe7G166000.1.p  63 EFYNAYAKEAGFSVRKWSEKRN-ANKEIIRKEYVCFKQWKGSLIEDA--EKSRRRGPLREGCKAKLAVAKSGNGKFAVTIFVEGHNHTLS 149
                        6***************999888.8888*************9998887..888899999******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1863149IPR004330FAR1 DNA binding domain
PfamPF105512.7E-33270363IPR018289MULE transposase domain
PfamPF044342.6E-6560588IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.954562594IPR007527Zinc finger, SWIM-type
SMARTSM005750.0016569597IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MDNLEPGSDL FEINGIGNNT ELEEVEMREN AKESFNYDII PPVANNLKPQ MGQDFSSLDD  60
VLEFYNAYAK EAGFSVRKWS EKRNANKEII RKEYVCFKQW KGSLIEDAEK SRRRGPLREG  120
CKAKLAVAKS GNGKFAVTIF VEGHNHTLST PRKTQLLRSH REVSSAQKCL SQQFSMVNIP  180
THQQYNFLGV QAGGFENIGC IQKDLYNYQR DVRKELKGHD AEMFRKYLKS EEEKNPSFTY  240
TIDVDDEQRI CRVFWADTTS RRDYALYGDV VVFDTTYNTN RYKLILAPLM GVNNHGQTII  300
FGCAFLSDET IHSFVWLFKQ FLQAMPGDAP KMIITDQDPA MTNAIAQTLP KTFHRYCSWH  360
ILNKFSEKLD AVKYRLCLVH GHSVYYKKFY NCIWHSKSQE EFDLVWLDLV QKSGLQDNKW  420
LESMFEIRFK WVPVYTSHVF SAEMSSSQRA ESSHSFFKKY VQEENPLLDF MVQFDRGLQK  480
QRHEALIADN KDVIEKPKLK MFHNILVQMV DIYTNEIFFK FQRELLESFN YKFQIISETY  540
TLRLYKTQRK NLETDKGRQV SYEKDLDHVS CSCNKFESMG IPCRHILAYL HKYTDFEKLP  600
NEYILKRWSK STKSKTVIDH GGMEIVDDRT YFLERSRLIQ CCLGVVNKAL TSEEAKQILI  660
DALSSAEEKI NLLIASSGSE KKDNYTVDYS TSGKRKKMVD CVTDVEMTEQ ANCYREPNQA  720
RAKGCGKRFK GGKEKATGSG KKFEGRLCKG CNQRGVGHDI RTCPKLAGVS LSQP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020272573.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2G5CLD20.0A0A2G5CLD2_AQUCA; Uncharacterized protein
STRINGAquca_046_00031.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-115FAR1-related sequence 5