PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G166200.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bHLH

Protein Properties

Length: 353aa MW: 38718 Da PI: 5.9608

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G166200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.9	0.00044	217	255	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Aqcoe7G166200.1.p 217 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 255 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.795	205	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.88E-6	215	259	No hit	No description
SuperFamily	SSF47459	2.36E-10	215	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.8E-8	219	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MNQGHVLQSM PVQQMMAGNP NWWNINNMRP PTQQQHHQAS SSPLLPSSSS LVFPNYIPSS 60 LPLSSSTWND NQDLPESWSQ LLLGGLVGED DRSCLSQFQA KKLENWEDQV LYSSSSLPVV 120 DVKQEISESA YVYNNQGNED FQAVTRPNWS HVMAATSPKS CVTSFSSNNI LDFSNNKPDG 180 RHPQPEQSSE CNSTSNGGPF KKARIQPSSS PTTFKVRKEK LGDRITALHQ LVSPFGKTDT 240 ASVLLEAIGY IRFLQNQIEA LSSPYLGQGS GNMRQNQQSV QGEKNCIFPE DPGQLLNDNC 300 LKRKGGPDQV SENEPKDLKS RGLCLVPVSC TLQVGSDNGA DYWAPTLGGG FR*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MNQGHVLQSM PVQQMMAGNP NWWNINNMRP PTQQQHHQAS SSPLLPSSSS LVFPNYIPSS  60
LPLSSSTWND NQDLPESWSQ LLLGGLVGED DRSCLSQFQA KKLENWEDQV LYSSSSLPVV  120
DVKQEISESA YVYNNQGNED FQAVTRPNWS HVMAATSPKS CVTSFSSNNI LDFSNNKPDG  180
RHPQPEQSSE CNSTSNGGPF KKARIQPSSS PTTFKVRKEK LGDRITALHQ LVSPFGKTDT  240
ASVLLEAIGY IRFLQNQIEA LSSPYLGQGS GNMRQNQQSV QGEKNCIFPE DPGQLLNDNC  300
LKRKGGPDQV SENEPKDLKS RGLCLVPVSC TLQVGSDNGA DYWAPTLGGG FR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010254048.1	0.0	PREDICTED: transcription factor bHLH68-like
Swissprot	Q8S3D1	6e-97	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A2G5FAC7	0.0	A0A2G5FAC7_AQUCA; Uncharacterized protein
STRING	Aquca_001_00379.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-97	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aqcoe7G166200.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]