PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G169200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family CPP
Protein Properties Length: 740aa    MW: 80536.9 Da    PI: 8.2565
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G169200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR444.4e-14159196240
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        + k+CnCk+s+Clk+YCeCfa+g++C+  C+C++C N+ 
  Aqcoe7G169200.1.p 159 KPKQCNCKNSRCLKLYCECFASGVYCDG-CNCTNCYNNV 196
                        5699************************.********96 PP
2TCR49.77.5e-16244283140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        k++kgC+Ck+s ClkkYCeCf+a+  Cs++CkC dCkN e
  Aqcoe7G169200.1.p 244 KHNKGCHCKRSGCLKKYCECFQANILCSDNCKCMDCKNFE 283
                        589***********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.10.109.0E-655116IPR011989Armadillo-like helical
SMARTSM011141.5E-13158198IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.342159284IPR005172CRC domain
PfamPF036383.8E-11161195IPR005172CRC domain
SMARTSM011144.0E-20244285IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-12247282IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MEQVEGGELP PKILQSSTTT TEIITGGADF PQRKLARQLD FTAFTGVSTG VVLPENLQRQ  60
RQHSQLQLQL QQQQQQQQQQ QQKLQQQQQQ QQQQQQQQQQ QKIQPPQPQQ KQPLPQSQSQ  120
SQPNPPPTLL SRPLPILRAD SPRAHPRPSI NTKDNTPKKP KQCNCKNSRC LKLYCECFAS  180
GVYCDGCNCT NCYNNVGNEE ARHEAIEATL DRNPNAFRPK IESSSPHGIR EARDEARELP  240
MVGKHNKGCH CKRSGCLKKY CECFQANILC SDNCKCMDCK NFEASEERRA LFHGDHSNSL  300
YMQQVAANAA ITGAVGSSGY GTPPAFKRRK NPELLFGTTS RDPSISRLPH IPQANHPKAS  360
LPSSVPVGRA VIPAQLGSSM FAYRSLLADI LQPRDVKQLC SVLVLVAGKA AKTLSDKKDT  420
VETQKETNQM ECSLPSSTQE KEKEVGHPKS LVDDRSSGNQ ADEMVTDDSG SDVQKGRPMS  480
PGTLALMCDE QDSMFMAAAS PKDTLGNDNN TSVHLPYEQG KSDVYAEQER LILTGFRDYL  540
LKLVDCGTMK GKKYSALGTR TDSETQPVPV GNGHVRPLDP DMSVASHTAS PVTVAQPGPV  600
GNGHVRPPVP DMFAASDRAS PVTVAQPVPV GNGMSAASHT ASRVTVAQPV PVGNGMSAAS  660
HTASRVTVAQ PVPVGNGISA ASHTASRVTV ACKDDLSSKN LMLPQVLKFK CLALTQLDKS  720
LLFNIHTSKE MIDEFVDYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-3215729310132Protein lin-54 homolog
5fd3_B4e-3215729310132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249672.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-155TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2G5FA750.0A0A2G5FA75_AQUCA; Uncharacterized protein
STRINGAquca_001_00408.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-156Tesmin/TSO1-like CXC domain-containing protein