PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G171600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 375aa    MW: 40668.3 Da    PI: 5.8453
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G171600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.11.7e-111048240
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                        i+n+s r+  +  R+ g++KK eELS+LC++e++ ii 
  Aqcoe7G171600.1.p 10 LIKNNSTRKNCLRVRKGGLIKKTEELSILCGVEACAIIH 48
                       599********************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-12161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.068161IPR002100Transcription factor, MADS-box
CDDcd002661.08E-21286No hitNo description
SuperFamilySSF554553.05E-19296IPR002100Transcription factor, MADS-box
PfamPF003193.0E-101148IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGKRKLKLEL IKNNSTRKNC LRVRKGGLIK KTEELSILCG VEACAIIHDG PNDLNPTVWP  60
SPEEAQHVVN RFKNLPEMGK NKRMTNPEDY LKQRNKKLVK KIKQQQLENR EMEMTEVMYQ  120
ALNGKGLGGM KKEDLDDLYW IIQKKEKEIE NRIDALRKKT SVQQLIVGSN GMNVEPSQSL  180
LMEEMNPHAG QQLPPPPPNG YNGGDAFVMP TPPPPNGYYG GDASVMMPTP PPPPNGYYGG  240
DLSVMPAPPP PNGYYGGDTS VMPTPPPSTG YYGGDTFVMP APPPPPNGYY DGDLSVMPAP  300
PPPNGYYGGD TSVMPTPPPS TGYYGGDAFV MPAPPPPPPN GYYGGDASVM PAPPPPNGYY  360
GGDASVMPVY DGYF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802370.0JX680237.1 Aquilegia coerulea MADS-box protein AGL80 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK7XWN71e-176K7XWN7_AQUCA; MADS-box protein AGL80
STRINGAquca_016_00296.12e-61(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-29AGAMOUS-like 80