PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G176000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

M-type_MADS

Protein Properties

Length: 226aa MW: 25208.8 Da PI: 8.7616

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G176000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.4	1.2e-15	25	60	10	45
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +vtfskR ngi+KKA EL +LC+a v+ifs+ g+ Aqcoe7G176000.1.p 25 HVTFSKRSNGIFKKATELATLCGAHPFVLIFSPGGN 60 7********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.9E-20	8	67	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	19.259	8	68	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-21	9	90	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-11	10	30	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.8E-17	18	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-11	30	45	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-11	45	66	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MSSGKKTAGR KKIAIEKIMV PKSLHVTFSK RSNGIFKKAT ELATLCGAHP FVLIFSPGGN 60 PHLFVHPSVK TIVNRFLTNG GQVENQNVAD YDDYKSACID GLAHRYNELK DQVEAAEKKR 120 DEKKNDNVKS PQYSLITSKF GKLDYSKIGN LNNIFEQAKH NAENQFPMFF KPLSSIYIAN 180 NQPIGYSDAL ALEVANQPGE LMELTMQAPD LHDIIDQQVP ICRTDP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5FAP9	1e-165	A0A2G5FAP9_AQUCA; Uncharacterized protein
STRING	Aquca_001_00458.1	1e-166	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	4e-22	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Aqcoe7G176000.1.p