PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G191500.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bHLH

Protein Properties

Length: 105aa MW: 11777.6 Da PI: 7.441

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G191500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.1	1e-05	80	103	28	55
CCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 28 PkaskapskKlsKaeiLekAveYIksLq 55 P+ +k + a++L ++veYIk+Lq Aqcoe7G191500.1.p 80 PN----MDKQTNTADMLDLVVEYIKELQ 103 33....4678*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.16E-6	77	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-6	78	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MPCFNLTFQS NEQNPEAGNQ TRNLTHHFSL PKTSVEMAAI LEFQDSVPCK IRAKRGCATH 60 PRSIAERVTT IYILTLALVP NMDKQTNTAD MLDLVVEYIK ELQK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026414452.1	4e-41	transcription factor bHLH130-like
Swissprot	Q66GR3	1e-31	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A2G5ECV1	1e-47	A0A2G5ECV1_AQUCA; Uncharacterized protein
STRING	Aquca_009_00280.1	2e-48	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	5e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aqcoe7G191500.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]