PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G192900.10.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 301aa    MW: 34319.4 Da    PI: 9.936
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G192900.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.42.3e-12200297196
                         EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 
                         ffk+++  ++ +++ +++pk+f+ +h     g     s+tl+l d +g++W v++  + + ++   +tkG   F ++ ++k  D++vF+l+
  Aqcoe7G192900.10.p 200 FFKITMGRSYINQASVSIPKSFTVSHlphvqG-LGSLSFTLQLSD-QGKKWHVEC--NHCHRGvWRITKGFFPFIRESNIKIVDICVFELI 286
                         89999999*******************99953.445899999888.9********..666666578************************9 PP

                         SSSEE..EEEE CS
                  B3  86 grsefelvvkv 96 
                         ++++  ++v++
  Aqcoe7G192900.10.p 287 NKENILFNVHI 297
                         87666566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.6E-53588IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.8E-16193298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-15194298IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-10200297IPR003340B3 DNA binding domain
PROSITE profilePS508639.827200300IPR003340B3 DNA binding domain
CDDcd100177.23E-10200299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSYLVFLFVF PVKQMAELKL KQKGDNPSPS IVRMKRNKFF RVIKSRYPQI EFPSEFVEEH  60
GYKLPDELVL KVRTGDFWNI KVKKFGERIR TLRDAEIDYP LKPHKFKNTI HGGAKLGEST  120
NKECVKNSTK NLGMTSPRED THQRTEHGEP SVYRANEDMA PEDVPAPKQV SCDTPAVSPS  180
QTNADGVGQR TGSFNSKYPF FKITMGRSYI NQASVSIPKS FTVSHLPHVQ GLGSLSFTLQ  240
LSDQGKKWHV ECNHCHRGVW RITKGFFPFI RESNIKIVDI CVFELINKEN ILFNVHILSC  300
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5FBF30.0A0A2G5FBF3_AQUCA; Uncharacterized protein
STRINGAquca_001_00601.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-09related to vernalization1 1