PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G192900.6.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 317aa    MW: 36024.2 Da    PI: 9.0247
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G192900.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.51.8e-11361131699
                        EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        + +p +f+eehg+k   + +l+l+ ++g  W++k+  +k ++r+   +GW++Fv+   + +g  + F++dg s+f   v ++++
  Aqcoe7G192900.6.p  36 IEFPSEFVEEHGYK--LPDELVLKVRTGDFWNIKV--KKFGERIRTLRGWQGFVEHYSIGVGYCLFFTYDGISSF--DVVICDA 113
                        5689*******999..7889***************..99999988888*********************999999..8888876 PP
2B338.22.5e-12216313196
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                        ffk+++  ++ +++ +++pk+f+ +h     g     s+tl+l d +g++W v++  + + ++   +tkG   F ++ ++k  D++vF+l++
  Aqcoe7G192900.6.p 216 FFKITMGRSYINQASVSIPKSFTVSHlphvqG-LGSLSFTLQLSD-QGKKWHVEC--NHCHRGvWRITKGFFPFIRESNIKIVDICVFELIN 303
                        89999999*******************99953.445899999888.9********..666666578************************98 PP

                        SSEE..EEEE CS
                 B3  87 rsefelvvkv 96 
                        +++  ++v++
  Aqcoe7G192900.6.p 304 KENILFNVHI 313
                        7666566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.75721114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.1E-1521113IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-825114IPR003340B3 DNA binding domain
CDDcd100177.45E-1225112No hitNo description
SuperFamilySSF1019362.55E-1526113IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-835113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15209314IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-15210314IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.026216315IPR003340B3 DNA binding domain
PROSITE profilePS508639.827216316IPR003340B3 DNA binding domain
CDDcd100177.54E-10216315No hitNo description
PfamPF023621.2E-10216313IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAELKLKQKG DNPSPSIVRM KRNKFFRVIK SRYPQIEFPS EFVEEHGYKL PDELVLKVRT  60
GDFWNIKVKK FGERIRTLRG WQGFVEHYSI GVGYCLFFTY DGISSFDVVI CDAEDAEIDY  120
PLKPHKFKNT IHGGAKLGES TNKECVKNST KNLGMTSPRE DTHQRTEHGE PSVYRANEDM  180
APEDVPAPKQ VSCDTPAVSP NGVGQRTGSF NSKYPFFKIT MGRSYINQAS VSIPKSFTVS  240
HLPHVQGLGS LSFTLQLSDQ GKKWHVECNH CHRGVWRITK GFFPFIRESN IKIVDICVFE  300
LINKENILFN VHILSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5FBF30.0A0A2G5FBF3_AQUCA; Uncharacterized protein
STRINGAquca_001_00601.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-17B3 family protein