PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G192900.9.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 296aa    MW: 33817 Da    PI: 10.0199
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G192900.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.42.2e-12195292196
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                        ffk+++  ++ +++ +++pk+f+ +h     g     s+tl+l d +g++W v++  + + ++   +tkG   F ++ ++k  D++vF+l++
  Aqcoe7G192900.9.p 195 FFKITMGRSYINQASVSIPKSFTVSHlphvqG-LGSLSFTLQLSD-QGKKWHVEC--NHCHRGvWRITKGFFPFIRESNIKIVDICVFELIN 282
                        89999999*******************99953.445899999888.9********..666666578************************98 PP

                        SSEE..EEEE CS
                 B3  87 rsefelvvkv 96 
                        +++  ++v++
  Aqcoe7G192900.9.p 283 KENILFNVHI 292
                        7666566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.4E-53588IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-16188293IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-15189293IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.827195295IPR003340B3 DNA binding domain
CDDcd100171.00E-9195294No hitNo description
PfamPF023621.0E-10195292IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSYLVFLFVF PVKQMAELKL KQKGDNPSPS IVRMKRNKFF RVIKSRYPQI EFPSEFVEEH  60
GYKLPDELVL KVRTGDFWNI KVKKFGERIR TLRDAEIDYP LKPHKFKNTI HGGAKLGEST  120
NKECVKNSTK NLGMTSPRED THQRTEHGEP SVYRANEDMA PEDVPAPKQV SCDTPAVSPN  180
GVGQRTGSFN SKYPFFKITM GRSYINQASV SIPKSFTVSH LPHVQGLGSL SFTLQLSDQG  240
KKWHVECNHC HRGVWRITKG FFPFIRESNI KIVDICVFEL INKENILFNV HILSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5FBF30.0A0A2G5FBF3_AQUCA; Uncharacterized protein
STRINGAquca_001_00601.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.15e-10related to vernalization1 1