PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G203800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family G2-like
Protein Properties Length: 447aa    MW: 49098.2 Da    PI: 7.2183
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G203800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.61.1e-31239294156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+
  Aqcoe7G203800.1.p 239 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIREFMKVDGLTNDEVKSHLQKYRLH 294
                        68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.52E-16236297IPR009057Homeodomain-like
PROSITE profilePS5129413.188236296IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-28237297IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-26239294IPR006447Myb domain, plants
PfamPF002491.2E-6241292IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MVSITSEVCQ DSKPHSYSML LKSFVDHPEQ TQKLEEFLAR LEEECLKIEA FKRELPLCMQ  60
LLTNAIETYR QQLQSYRGNQ GTNKPVLEEF IPLKHSSSEG SEKTSSISEK SSWMVSAQLW  120
SQSNDGNKQQ TITSSPKETD QSFSPKLSLD DKKRNGGGGA FLPFTKERNT CASPNTLRVL  180
SDLALASTDD KELNDNKKCL ESDKVKGGNG GTISEQGKTG AGNQTEAQAA STNSQTHRKA  240
RRCWSPDLHR RFVNALQMLG GSQVATPKQI REFMKVDGLT NDEVKSHLQK YRLHTRRPSP  300
SHQAAGNQAP QLVVLGSIWV PPEYATAAHG GGPTIYSAHP ASLATTHYCA PQEFYPAPSS  360
HQLHHTIHHP HPHHQPHVYK TSSKTHSSPE SDTQGAGDRS ESIEDGKSES SSWKGDSGEN  420
GGERRGLASL RDEGEKSDGN EITLSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-13239292255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-13239292255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-13239292154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-13239292154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-13239292154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-13239292154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-13239292255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-13239292255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-13239292255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-13239292255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-13239292255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-13239292255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254263.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotQ9ZQ851e-118EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A2G5FBK40.0A0A2G5FBK4_AQUCA; Uncharacterized protein
STRINGAquca_001_00694.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-118G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]