PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G205100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 537aa    MW: 58810.9 Da    PI: 4.8243
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G205100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS427.97.8e-1311575181373
               GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                        lv+lL++cAe v+ gd +la +++ +++ l  + ++g+ + ++a yf  AL++rl++        l+  + s     e+   ++ f+e++P+
  Aqcoe7G205100.1.p 157 LVHLLMACAESVQRGDVSLAGSIIGEMKSLltRVNTGSGIGKVAGYFIDALSRRLYS-------PLAICAGS---AMENEILYHHFYEACPY 238
                        68**************************998888999*******************9.......44444444...4555567799******* PP

               GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                        lkf+h+taNqaIlea+eg++ vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa++A +++vpf f+ ++
  Aqcoe7G205100.1.p 239 LKFAHFTANQAILEAFEGQDYVHVIDFNLMHGLQWPALIQALALRPGGPPFLRLTGIGPPSPDGRDSLREIGLRLAELAWSVNVPFTFRGVA 330
                        ******************************************************************************************** PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        a+rl+d+++++L+vkp+Ea+aVn+++qlhr+l  +   es++d+vL+ +++l+Pk+v+v+eqea+hn+++Fl+rf+eal+yys++fdslea 
  Aqcoe7G205100.1.p 331 ASRLDDVKPWMLQVKPREAVAVNSIMQLHRILGPDPIRESPIDTVLSWIRGLNPKIVTVIEQEANHNQPEFLDRFTEALYYYSTMFDSLEAC 422
                        ********************************9999999**************************************************998 PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                           + + +++v + ++++ei+nvv+ceg++r+erhe l kWrerl++aGF+p++l+++a kqa++ll  ++ +gy vee++g+l+lgW++rp
  Aqcoe7G205100.1.p 423 ---TLQPEKSVAEIYIQKEICNVVCCEGSSRVERHEPLIKWRERLTTAGFSPLHLGSNAFKQASMLLTLFSAEGYCVEEKEGCLTLGWHNRP 511
                        ...568888899999***************************************************************************** PP

               GRAS 367 LvsvSaW 373
                        L+s+SaW
  Aqcoe7G205100.1.p 512 LISASAW 518
                        ******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120412.2E-273192IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.1E-153199No hitNo description
PROSITE profilePS5098564.756131499IPR005202Transcription factor GRAS
PfamPF035142.7E-128157518IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MTPFSSGVSN NDGCSSSSSS SCVTGKPSEI DGFLAGAGYK VKSSELRQVA QRLERLENVM  60
VNAPDVGSDV VHYNPSDLAS WVDSILSEFN QPLPTPSDLS ADFSDLSYIT NTVVPVLPPP  120
PQISPMDDTW DNQFTPSQSQ PLTTVVAAIE EDSGIRLVHL LMACAESVQR GDVSLAGSII  180
GEMKSLLTRV NTGSGIGKVA GYFIDALSRR LYSPLAICAG SAMENEILYH HFYEACPYLK  240
FAHFTANQAI LEAFEGQDYV HVIDFNLMHG LQWPALIQAL ALRPGGPPFL RLTGIGPPSP  300
DGRDSLREIG LRLAELAWSV NVPFTFRGVA ASRLDDVKPW MLQVKPREAV AVNSIMQLHR  360
ILGPDPIRES PIDTVLSWIR GLNPKIVTVI EQEANHNQPE FLDRFTEALY YYSTMFDSLE  420
ACTLQPEKSV AEIYIQKEIC NVVCCEGSSR VERHEPLIKW RERLTTAGFS PLHLGSNAFK  480
QASMLLTLFS AEGYCVEEKE GCLTLGWHNR PLISASAWHV LPPSATIENS TTVSVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-6615051811377Protein SCARECROW
5b3h_D4e-6615051811377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249953.10.0PREDICTED: DELLA protein SLR1-like
SwissprotQ8S4W71e-163GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2G5FBU20.0A0A2G5FBU2_AQUCA; Uncharacterized protein
STRINGAquca_001_00705.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-162GRAS family protein