PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G207700.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 644aa MW: 75338 Da PI: 8.4866

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G207700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.4	1.1e-18	45	129	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn++A + GF +r+++s ++++e ++ Cskeg++ e++ ++r++ r+gC+a+lkvk++ ++kw+++++e+eHnH ++ Aqcoe7G207700.1.p 45 NFYNRHAMRKGFGTRVKRSCIDRKTKEKNFVWLSCSKEGFKIEKEGV----VHKRPNPRVGCDAHLKVKMD-SNKWKIISFESEHNHVCS 129 6**************************************998777....899999********99.9************765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-15	45	129	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-27	250	335	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.124	518	554	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0018	529	556	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence Send to blast
MSEDEYEDCE FADSINIDEN NKLNVDQDIE PKTGMTFPTY EDAKNFYNRH AMRKGFGTRV 60 KRSCIDRKTK EKNFVWLSCS KEGFKIEKEG VVHKRPNPRV GCDAHLKVKM DSNKWKIISF 120 ESEHNHVCSP SKSHRFRSHK HMESGSKKRL ELHCDAGIRV NKSFHSMVVD AGGHANVLFG 180 QKDARNYVNK YKRLKLQEGD AEAMHKYFTR MQQKNPNFFY LVDLDPEGRL RNVFWADARS 240 RDAYKYFGDV VTFDTTYLTN RYDLKFASFV GVNHHGQSIL FGCGLLADET SETFEWLFNA 300 WLEAMFKHSL RAIITDQSKA MENAIIKVFP AARHQYKAIK KAMKNAVYES LRINEFEEVW 360 ASMVEKHKLQ QNKWLTKLYN LRQKWVHVFL KDIIFAGMSI TQPRESMNAF FDGYIHAKTS 420 LKEFVDQYEM ALEDKYEKES QADFDSFNAS PPLKTSCLFE SQLVKVYTKA MFLKFQSELY 480 GMASCSKSQL RVDRKITTYA VKERVLDKNG NLLPPKTYEV YFNNGEIEVS CICRLFQHKE 540 ILCKHALHVL NEFVDEIPSQ YILPRWRKDF KRTYNDNCCS HAHNPVQRYD VLYPCALQIL 600 EEGMLSDSKF KIVLDGFMEL KKKVLNENKD MCDEDNDPDI IRR*

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence Send to blast

MSEDEYEDCE FADSINIDEN NKLNVDQDIE PKTGMTFPTY EDAKNFYNRH AMRKGFGTRV  60
KRSCIDRKTK EKNFVWLSCS KEGFKIEKEG VVHKRPNPRV GCDAHLKVKM DSNKWKIISF  120
ESEHNHVCSP SKSHRFRSHK HMESGSKKRL ELHCDAGIRV NKSFHSMVVD AGGHANVLFG  180
QKDARNYVNK YKRLKLQEGD AEAMHKYFTR MQQKNPNFFY LVDLDPEGRL RNVFWADARS  240
RDAYKYFGDV VTFDTTYLTN RYDLKFASFV GVNHHGQSIL FGCGLLADET SETFEWLFNA  300
WLEAMFKHSL RAIITDQSKA MENAIIKVFP AARHQYKAIK KAMKNAVYES LRINEFEEVW  360
ASMVEKHKLQ QNKWLTKLYN LRQKWVHVFL KDIIFAGMSI TQPRESMNAF FDGYIHAKTS  420
LKEFVDQYEM ALEDKYEKES QADFDSFNAS PPLKTSCLFE SQLVKVYTKA MFLKFQSELY  480
GMASCSKSQL RVDRKITTYA VKERVLDKNG NLLPPKTYEV YFNNGEIEVS CICRLFQHKE  540
ILCKHALHVL NEFVDEIPSQ YILPRWRKDF KRTYNDNCCS HAHNPVQRYD VLYPCALQIL  600
EEGMLSDSKF KIVLDGFMEL KKKVLNENKD MCDEDNDPDI IRR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5FBW9	0.0	A0A2G5FBW9_AQUCA; Uncharacterized protein
STRING	Aquca_001_00727.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-149	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Aqcoe7G207700.1.p