PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G221500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family AP2
Protein Properties Length: 343aa    MW: 38335.5 Da    PI: 7.585
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G221500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.17e-163797156
                AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56
                       s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g+
  Aqcoe7G221500.1.p 37 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWGH 97
                       57*******************999955656446*************************997 PP
2AP251.32.9e-16139190155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Aqcoe7G221500.1.p 139 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 190
                        89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-123797IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1737105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-1638105IPR001471AP2/ERF domain
PROSITE profilePS5103220.0238104IPR001471AP2/ERF domain
SMARTSM003804.7E-2638110IPR001471AP2/ERF domain
PRINTSPR003673.8E-63950IPR001471AP2/ERF domain
PfamPF008475.2E-12139190IPR001471AP2/ERF domain
CDDcd000188.29E-24139200No hitNo description
SuperFamilySSF541719.81E-18139200IPR016177DNA-binding domain
PROSITE profilePS5103218.334140198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17140199IPR001471AP2/ERF domain
SMARTSM003801.2E-24140204IPR001471AP2/ERF domain
PRINTSPR003673.8E-6180200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGKTSTNNNI NNNKNSATKV KRTRKSVPRD SPPQRSSIYR GVTRHRWTGR YEAHLWDKNC  60
WNESQNKKGR QVYLGAYDDE EAAAHAYDLA ALKYWGHETI LNFPLVTYQE ELKEMEGQSK  120
EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT YATQEEAATA  180
YDMAAIEYRG LNAVTNFDLS RYIKWLRPGP TTNDTNPTDL SPSPILNTNH DDIGFSPMTH  240
QKTVGSKISV TKPAIGGGGA TASSALGLLL QSSKFKEMLE RTSAADCLST PLESDPPKCS  300
FPEDIQTYFG CQDSSNYTEG DDVIFGDLNS FSSEMFECEL DA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051280.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
RefseqXP_028051281.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-123AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2G5CKP50.0A0A2G5CKP5_AQUCA; Uncharacterized protein
STRINGAquca_048_00034.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-110ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]