PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G236100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 776aa MW: 89220.5 Da PI: 9.1545

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G236100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.4	1.1e-18	62	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 +fY+eY+++ GFs+r+++ ++ + +++it+ +vCs+eg +++++ k + + r++++ r++Cka+++++k+k ++ +evt +e+ H+H Aqcoe7G236100.1.p 62 NFYREYGRKEGFSTRTRTIDRKqHGSNTITSCLLVCSREGVHNRREVKfggISGKPRNTSTVRCECKASMRLTKRKfEEIYEVTMVENTHSH 153 6************999877735677899999*******9999999888999999************9************* PP FAR1 88 ela 90 l+ Aqcoe7G236100.1.p 154 GLV 156 997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-15	62	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.6E-32	272	365	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.889	556	592	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.1E-4	564	589	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 776 aa Download sequence Send to blast
MDLSKDDDVN NLEPIDLSGD DGEPNRCANI GSPSNETPKK DTLKAETPHL GMTFKTVDDA 60 KNFYREYGRK EGFSTRTRTI DRKQHGSNTI TSCLLVCSRE GVHNRREVKF GGISGKPRNT 120 STVRCECKAS MRLTKRKFEE IYEVTMVENT HSHGLVSPCK RMNMRVNKCM PEAAKKLTMV 180 FHDEGLPVAK VASVFCGDTI GFTAKDCHNH FGSTRKKPKE GDATAVLHYF EKMSAEDPQF 240 YYAIQSDAKG RAVNFFWVDG RSRMQYEYFG DVVSFDTTYR TNAYKMPFAP FTGVNHHLMS 300 IQFGCGLLLD ETEGTFVWLF KTWLAAMGGR PPTSMITDQD KAMTSAVARV FLNTRHRHCL 360 WHITNKFPEK LAHVMHVNEK FSEELKLIIS GSYRTYDFER KWNEHMVKYK LVDHSWLKSI 420 FEARRTWVPA YHLDTFFAGM NTTGRSESMN SYYDMFLKPT TTLSDFVYSI DKLLRLIIKN 480 ERDFDYRTEH SSRIVGKDDF LLKHAGKVYT LNAFGKFKSQ WDKAKGVYKI DKEVSGDNGF 540 NTYTLKSRNV NNPNFWNVIF NTSTLQGECE CKYFSFMGLP CGHLLKVFWR HDIDQIPDHF 600 IMRRWTQKAN TYRAMFEGGL VNGHETSEAL RLTHGCRLAT QLAFDASTHD EMYKYLVEKF 660 DELSIEIAKR KETLNKSVNS EVASHQVSEE LSIVDPSQVL LLNPNISQTK GRKEKTKVND 720 SGRIKRGIEI SQEKKRRRCS CCQKVVNHDL RTCPKNPNRK KKATCTNDDH CLEKS*

Sequence ? help Back to Top

Protein Sequence Length: 776 aa Download sequence Send to blast

MDLSKDDDVN NLEPIDLSGD DGEPNRCANI GSPSNETPKK DTLKAETPHL GMTFKTVDDA  60
KNFYREYGRK EGFSTRTRTI DRKQHGSNTI TSCLLVCSRE GVHNRREVKF GGISGKPRNT  120
STVRCECKAS MRLTKRKFEE IYEVTMVENT HSHGLVSPCK RMNMRVNKCM PEAAKKLTMV  180
FHDEGLPVAK VASVFCGDTI GFTAKDCHNH FGSTRKKPKE GDATAVLHYF EKMSAEDPQF  240
YYAIQSDAKG RAVNFFWVDG RSRMQYEYFG DVVSFDTTYR TNAYKMPFAP FTGVNHHLMS  300
IQFGCGLLLD ETEGTFVWLF KTWLAAMGGR PPTSMITDQD KAMTSAVARV FLNTRHRHCL  360
WHITNKFPEK LAHVMHVNEK FSEELKLIIS GSYRTYDFER KWNEHMVKYK LVDHSWLKSI  420
FEARRTWVPA YHLDTFFAGM NTTGRSESMN SYYDMFLKPT TTLSDFVYSI DKLLRLIIKN  480
ERDFDYRTEH SSRIVGKDDF LLKHAGKVYT LNAFGKFKSQ WDKAKGVYKI DKEVSGDNGF  540
NTYTLKSRNV NNPNFWNVIF NTSTLQGECE CKYFSFMGLP CGHLLKVFWR HDIDQIPDHF  600
IMRRWTQKAN TYRAMFEGGL VNGHETSEAL RLTHGCRLAT QLAFDASTHD EMYKYLVEKF  660
DELSIEIAKR KETLNKSVNS EVASHQVSEE LSIVDPSQVL LLNPNISQTK GRKEKTKVND  720
SGRIKRGIEI SQEKKRRRCS CCQKVVNHDL RTCPKNPNRK KKATCTNDDH CLEKS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021815267.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A251PRW6	0.0	A0A251PRW6_PRUPE; Uncharacterized protein
STRING	XP_008219733.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-118	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe7G236100.1.p