PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G237400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 795aa    MW: 91470.2 Da    PI: 8.6109
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G237400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.99e-2068157291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                        fYneYAk  GFsvrk++++    +g++ +r+f Cs+ g re++ ++ ++++++ r  tr++C a l++  ++  + w v  + ++HnH lap
  Aqcoe7G237400.1.p  68 FYNEYAKFKGFSVRKDHKTVV--DGRTRRRRFICSCAGVRERKWTNlHKRRKKARRLTRCNCPAALNIVYDDeLNMWTVRGFMSQHNHVLAP 157
                        9***************97776..999****************9999677788899*************9999899*************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1768157IPR004330FAR1 DNA binding domain
PfamPF105515.7E-36278372IPR018289MULE transposase domain
PROSITE profilePS5096610.806557593IPR007527Zinc finger, SWIM-type
SMARTSM005752.9E-6568595IPR006564Zinc finger, PMZ-type
PfamPF044344.8E-6569591IPR007527Zinc finger, SWIM-type
Gene3DG3DSA:4.10.60.105.7E-7722786IPR001878Zinc finger, CCHC-type
SMARTSM003430.69731747IPR001878Zinc finger, CCHC-type
SMARTSM003430.85768784IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MSAFVDEFVE DFSDDSEAEG DNPRRRNADF LYKVGLRLQD EIHDDMGEIS DEDMLRARFN  60
TDEDAYFFYN EYAKFKGFSV RKDHKTVVDG RTRRRRFICS CAGVRERKWT NLHKRRKKAR  120
RLTRCNCPAA LNIVYDDELN MWTVRGFMSQ HNHVLAPSGG SHFLRSHRKV SLSNAVLAQN  180
LYALGVSKKL VMDIIISKSG SHAAAGCTAR DLYNQMNRAR VERIIDGDAN LVNSFLEDMN  240
VRDPGFFKKI QVNEKKQLTK LFWSDSQSQE DYKLFGDVLM FDSTYRTNRY DMPLVVFAGV  300
NNHRHTVIYA LALMNNETID SYEWALKTFL AAMDGIAPKS VITDGDAAIR NAIENVFPKS  360
KHRLCVWHVV QNAITNVWTD GFVKGFVEAM FCKGPPDAFE KKWAELLIEY KTVAEQKWVH  420
NIYEKKEMWA EAYLREYFFV GCRSNQRCES INSVVRVCVK SGLSLIELVD KLLQKIRHIR  480
YRDFEAEVNT TMTRSAQIPN LTLIGEQAEA LYTRAGYEYF FKQLLHEPSY VVNESYEDGE  540
DIIKYLVNRH MHPNAPATVE YNREKDAYNC TCKLFERVGF LCRHILAVLK HTHVKALPKS  600
CILHRWTREA KSSSLDFGTN PTTSCRLGFG LRLKELEEYS RDLFMWGCES VQRCTMVKGH  660
IAAFDKGEVA QGFDETPVPE NPLGFEEEPV ASTPPQSFPP DNIVDPQRDL GRRGGPRRAK  720
RKMFHQRTST RCGICHIVGH SRRTCPSERT GVFADVPPEV TSSRKAPTCS FCNEVGHRCN  780
ACPRRRKHQS KIFY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106121RKWTNLHKRRKKARRL
2782786PRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EJ870.0A0A2G5EJ87_AQUCA; Uncharacterized protein
STRINGAquca_007_00263.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-99FAR1-related sequence 5