PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G247400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 257aa    MW: 30113.4 Da    PI: 7.832
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G247400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.24.9e-1721108191
               FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        ++Yne A++v Fs+++++++k+ ++ ++++ +t++Cs+eg+ ++ ++     rr+r+e r gC ak+++k++kd+k+e+tk+  eH+Hel+p
  Aqcoe7G247400.1.p  21 NYYNEIARTVEFSIKIKRTNKHhRDFDKVVLQTLCCSCEGTYTKVHTP----RRRREERRFGCMAKFEIKLNKDEKFELTKFLAEHSHELVP 108
                        69*************9998887577799**************998777....999***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-1321108IPR004330FAR1 DNA binding domain
PfamPF105516.5E-12208256IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MINSFRPNLG LLFDNVKDAY NYYNEIARTV EFSIKIKRTN KHHRDFDKVV LQTLCCSCEG  60
TYTKVHTPRR RREERRFGCM AKFEIKLNKD EKFELTKFLA EHSHELVPPT CSYLLRSHRD  120
IYYYFCAEAG GAEHVNLSQS HCNTLLQRER VEILKKGDAV CLLEYFKQKK QENKYFYYDI  180
LTNEESEIRG IFFCDALSRR DYALFGDVIC FDTTFRTNNY NLVCAPIVGV NNPGQTTIFG  240
CALLERETSD AIIWMF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026397296.14e-91protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2P6SL245e-85A0A2P6SL24_ROSCH; Putative transcription factor FAR family
TrEMBLM5Y1H33e-86M5Y1H3_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ255105e-87(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-37FAR1-related sequence 5