PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G252300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 399aa    MW: 43182 Da    PI: 8.3939
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G252300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.73e-11528226
                       -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                       k  +Cr+f+r G C+yGd+CkF H+
  Aqcoe7G252300.1.p  5 KKQPCRNFMR-GSCHYGDQCKFLHS 28
                       6789******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.624330IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.87E-6430IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-7529IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-9528IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MYRGKKQPCR NFMRGSCHYG DQCKFLHSTN INQQQQSMPT ISSSSSSNNN NNPFGFGKLA  60
SQQSKAAPSS SFASVPKQQN QFKPFENKWT RDTNVAKQSN EPQPPPTQPA NHICTDPNTC  120
KRLIAEDFQH ERPIWKLSCY GHFKYLPCDI KGDISPEELR AAAYDDGKKG MSLLAIVERE  180
RNMVNSKLIE YENFLRNPYV ISSHTSTFPG VNVPQSPATV QNNVPPPVSS FSQLGMLTNQ  240
GSKPSAVVPS SGNFGQQNPF PVTSQTPGFS NNPTFGTQGL FGNQQHGNAS IVNTSLGFGN  300
LTASLPNPFQ SANVATNQGH MQPLGNVSAF NIPFGNVAVT PTSSSSAASV QSPFVPIGHN  360
AAGENSPDVV HGDMSIWLKE KWSPGEIPEE APPAGYCF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021689229.11e-97zinc finger CCCH domain-containing protein 16 isoform X1
TrEMBLA0A2G5D0G00.0A0A2G5D0G0_AQUCA; Uncharacterized protein
STRINGAquca_031_00041.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.12e-57C3H family protein