PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G263600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 311aa    MW: 35004.6 Da    PI: 5.33
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G263600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.33.9e-17236272135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cg ++  Tp++Rrgpdg++tLCnaCGl+++ kg+
  Aqcoe7G263600.1.p 236 CRHCGISEksTPMMRRGPDGPRTLCNACGLFWANKGT 272
                        *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.6995130IPR010399Tify domain
SMARTSM009795.2E-995130IPR010399Tify domain
PfamPF062002.3E-12100129IPR010399Tify domain
PfamPF062036.5E-17163205IPR010402CCT domain
PROSITE profilePS5101713.592163205IPR010402CCT domain
PROSITE profilePS5011410.541230287IPR000679Zinc finger, GATA-type
SMARTSM004013.5E-14230283IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.56E-13232285No hitNo description
CDDcd002028.46E-15235280No hitNo description
Gene3DG3DSA:3.30.50.104.6E-15235277IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.8E-15236272IPR000679Zinc finger, GATA-type
PROSITE patternPS003440236263IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MHRVTHHTEQ ITEIRASNVG NGKNIESNYR QRGNGMMPFR NGDDMDDDEE EEVEEEEEEE  60
EEEEEEGEES EGVEGDVRLS DNGNLSDQQT LAVTDGNVGN QLTLSFQGEV YVFDSVSPEK  120
VQAVLLLLGG REIPVGVPAL PISSHHNIRE LSHVPQRLDV PQRLASLMRF REKRKERNFD  180
KKIRYSVRKE VAQRMKRHKG QFTSSKPTYE GSASVLSWDS PQWNPDGNGF QQNSTCRHCG  240
ISEKSTPMMR RGPDGPRTLC NACGLFWANK GTLRQLSKTK RMPLQNHPSS KVNKEETTAN  300
NPDAKNGLDS *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276694.11e-104PREDICTED: GATA transcription factor 28 isoform X1
SwissprotQ8H1G05e-84GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A2G5DJP00.0A0A2G5DJP0_AQUCA; Uncharacterized protein
STRINGAquca_018_00034.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-85ZIM-like 1