PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G270500.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

M-type_MADS

Protein Properties

Length: 132aa MW: 14930.2 Da PI: 10.0054

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G270500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	37.2	3.7e-12	24	60	13	49
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyey 49 f kR gi+KKA EL LC++ v+ifs+ gk + + Aqcoe7G270500.1.p 24 FLKRTSGIFKKATELAFLCGVHPFVLIFSPGGKPHVF 60 99*****************************997665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	13.512	4	64	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.0E-5	4	63	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.62E-15	12	74	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.6E-13	23	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-5	26	41	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-5	41	62	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MPNNQHTRLL SKRLRHLNTC KSHFLKRTSG IFKKATELAF LCGVHPFVLI FSPGGKPHVF 60 VHPSVDVIVN QFLNDVGLVE KQDDAVAYND YKCAGIDGLA RRYNKLNDQV EVVEKRHCDK 120 KNDNTKSRNT L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX680230	5e-89	JX680230.1 Aquilegia coerulea MADS-box protein AGL69 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5CB19	3e-60	A0A2G5CB19_AQUCA; Uncharacterized protein
STRING	Aquca_069_00021.1	5e-61	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	6e-17	AGAMOUS-like 29

Link Out ? help Back to Top
Phytozome	Aqcoe7G270500.1.p