PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G276600.5.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 567aa    MW: 63293.9 Da    PI: 6.3935
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G276600.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-07315335526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+++++ G C+ Gd+CkF+H+
  Aqcoe7G276600.5.p 315 PCKHYLK-GKCQQGDSCKFSHD 335
                        7******.*************5 PP
2zf-CCCH19.22.2e-06370389625
                        -SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                        C+ +   G+C++Gd+C F+H
  Aqcoe7G276600.5.p 370 CDSYKSKGFCPRGDTCLFSH 389
                        9999999************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.422310337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6310335IPR000571Zinc finger, CCCH-type
SMARTSM003560.0093311336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4315335IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-5315335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544339366IPR000571Zinc finger, CCCH-type
SMARTSM003560.024339365IPR000571Zinc finger, CCCH-type
SMARTSM003560.025367391IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.319369392IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4370390IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MGGEEEDEEA ALAVALGFPP YRRSLLKSKT YEAFVKISSL FDQISPKSGK ETQDKERDFI  60
SENSVEKELV NCKAITSDDL GQREQQILDI SNRTSLSEER EGGGGSGREE REKGEDLIKD  120
LDVEEGEISD DTEEINVSDD QEHCSVDIAE RDLEEGQICG DFIEKEEFPG TCTEENRTHE  180
KDILSTSSIG EMSNLIDDLG LNVVKDKKFE ELSSENLICG SSQLDRRKNN GVITRDTLGH  240
MGAASERVMA DIEGNKASVK DFEVGVKRKR VLTKERKERK KAKRRIKRVQ KDRQEGVKRL  300
NLRSNVTEKP KPKLPCKHYL KGKCQQGDSC KFSHDCIPLT KSEPCRFFAC NKCLKGDDCP  360
YDHELFKYQC DSYKSKGFCP RGDTCLFSHK MLLVRPESDA NKKAQENFSL QPLKGSTSQH  420
TLSMSKNMTL RTPASVGSIT RHPGQKAVEM KPAAQAPKGI SFLLFDKDPS DESSKQQKSN  480
LPPIGDNSVS QKIHNSNEIL VRTPTSTPLY QSKMTTEGPD KNINSAQKAP TSQFVRTMDQ  540
SAQSSVSHGN FPTVSSILQE FLFNGH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279287KKAKRRIKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5FC770.0A0A2G5FC77_AQUCA; Uncharacterized protein
STRINGAquca_001_00857.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.16e-06zinc finger nuclease 2