PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G279000.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 327aa    MW: 36337.7 Da    PI: 8.6902
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G279000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96.2e-1280104126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ykt++C +f   GtC+yG++C+FaHg
  Aqcoe7G279000.2.p  80 YKTRPCERFKD-GTCPYGPNCNFAHG 104
                        9**********.*************8 PP
2zf-CCCH27.74.6e-09140162325
                        S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                        ++lC++f+ +  C+yG+rC++ H
  Aqcoe7G279000.2.p 140 HKLCKNFYNGRVCPYGERCNYLH 162
                        689******************** PP
3zf-CCCH39.21.1e-12221246126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt+ C+ +  +G C++G++C+FaHg
  Aqcoe7G279000.2.p 221 WKTRMCNKWETSGSCPFGEKCHFAHG 246
                        8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.06E-978110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.59679106IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-679105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-1579112IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-980104IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.056137165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-7138164IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6140162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-7141163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-16218251IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-9219251IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6220247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.084220248IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-9221246IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSAPAPPPSH FVSQPPFAPI GFWPENPNDN EQSSPPGSRP DFPPFKKPRN SEDSSSIAVS  60
NHNKNLRMPP PCRGNGKLFY KTRPCERFKD GTCPYGPNCN FAHGIEDLRR PPPNWQEIVG  120
PQVDDRSSKW EEDLKIITRH KLCKNFYNGR VCPYGERCNY LHEDPGKFRE ESGKFRESSV  180
INISTAGTSL DNGARSDHSD AINTAHSNVD SNWVNSKPVS WKTRMCNKWE TSGSCPFGEK  240
CHFAHGVAEL KKFGGHIESE IGNAGTPPPK PLPKSANDVS LTNAVAGPSS KKQVLNKFLL  300
KWKGPEKISR IYADWIDDIP SSKLEN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254349.11e-126PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1
TrEMBLA0A2G5FC700.0A0A2G5FC70_AQUCA; Uncharacterized protein
STRINGAquca_001_00803.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.19e-72C3H family protein