PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G279100.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 730aa    MW: 84745.9 Da    PI: 9.5108
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G279100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.31.6e-1533115490
               FAR1   4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        ne+++e GF v+k++skk  ++g+  +  f C ++gk+++++++   + ++++ ++t+C a+++  + +dg+w+vt +++eHnHel+
  Aqcoe7G279100.2.p  33 NEHGNEKGFAVKKRSSKKG-DDGKHRWVMFACARSGKSKSNSRN---AFKKHPISKTNCGARVNAVLCTDGRWRVTLVHHEHNHELS 115
                        678999******9998887.8999****************9998...9999**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.6E-1333115IPR004330FAR1 DNA binding domain
PfamPF105512.3E-20227288IPR018289MULE transposase domain
PROSITE profilePS5096610.101478514IPR007527Zinc finger, SWIM-type
SMARTSM005757.6E-5489516IPR006564Zinc finger, PMZ-type
PfamPF044341.3E-4490512IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MIATSATSKK NYDGLISKFN SPELEYVGNL DLNEHGNEKG FAVKKRSSKK GDDGKHRWVM  60
FACARSGKSK SNSRNAFKKH PISKTNCGAR VNAVLCTDGR WRVTLVHHEH NHELSLGKSC  120
FYKNNRVIAP FVKRRLEMND LAGIRPNKNF NSFVMEAGGD ENIPFLQKDC NNFLDKVRRL  180
RLGDGDAAAI QNYFTKMQAN NSNFYYVIDL DTEARIKNVF WADARRCALI SSEDTKTFTW  240
LFNTWLECMG DRPPNAIVTD QARAMQNAIE NVSPNTRHRW CLWHIMKKVP EKLGGYKQYE  300
LIKSAMEGAV YDSLSILEFE ESWIMFTEKY NLHKNDWLAC LYIERHRWVP VFVKDIFWAG  360
MSTTQRSESM NAFFDGYVNS KTTLKQFVEQ YENALRSKVE KECQADFNSF NSWLPCITHY  420
EIEKRFQGIY TTAKFKEFQN ELTGKIYCDV LSIKEDGGLV VYEILEDKIG GKDRQKTFTV  480
SFKQSDCNVK CNCRLFEFRG ILCRHSIVVF IQQKLKIVPE RYILRRWRKD IKRCHTKVKI  540
IYFDWMQKPE NEKFDRMCNA FYQVADLATG DEDTTKHVMK WIEQLRVDLH KVKEARENNE  600
PSSVLASQVH VSSTTGDSNP NVKESGIVHS PLALCRRGRA PFKRMQPMVE QVVQKKKENE  660
KEKEKRKKRR KTKTDDHIVS DLNPEKVDII SLDGAIASAV VPSGASTDLR WWINGVWWDT  720
RKHYHEGLI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1654670KKKENEKEKEKRKKRRK
2660669KEKEKRKKRR
3664670KRKKRRK
4666670KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021813341.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2G5ETG70.0A0A2G5ETG7_AQUCA; Uncharacterized protein
STRINGAquca_004_00129.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-92FAR1-related sequence 5