PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G283200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 191aa    MW: 21448.1 Da    PI: 5.2393
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G283200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS217.75.8e-672180194374
               GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerik 284
                        +++++gE++aVn+v++lh+ll++s++l++    vL+ +k+++Pk++++veqea+hn+++F +rf+eal+yys+lfdsl e  l++ s+++  
  Aqcoe7G283200.1.p   2 FDLRHGETIAVNSVFELHQLLAQSGALNK----VLSSIKEMKPKIITIVEQEANHNGPNFIDRFTEALHYYSSLFDSLeEYPLSPLSNQDLI 89 
                        68899************************....*********************************************9999********** PP

               GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        ++++++gr+i+n+v+ceg +r+erhe l++Wr+rle+aGF+  +l++++  q+++ll +++ + gy+vee++g+l+lgW++rpLv+ SaW+
  Aqcoe7G283200.1.p  90 MSEMYFGRQICNIVSCEGVDRTERHECLNQWRNRLESAGFSLSHLGSNTFRQVNSLLTMFDaGSGYNVEENNGCLLLGWHTRPLVASSAWQ 180
                        ******************************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.7091159IPR005202Transcription factor GRAS
PfamPF035142.0E-642180IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MFDLRHGETI AVNSVFELHQ LLAQSGALNK VLSSIKEMKP KIITIVEQEA NHNGPNFIDR  60
FTEALHYYSS LFDSLEEYPL SPLSNQDLIM SEMYFGRQIC NIVSCEGVDR TERHECLNQW  120
RNRLESAGFS LSHLGSNTFR QVNSLLTMFD AGSGYNVEEN NGCLLLGWHT RPLVASSAWQ  180
IGSSIKSECN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B6e-242180289473Protein SHORT-ROOT
5b3h_B3e-242180235419Protein SHORT-ROOT
5b3h_E3e-242180235419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264458.12e-93PREDICTED: DELLA protein GAI1
SwissprotQ8S4W77e-88GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2G5CCG51e-139A0A2G5CCG5_AQUCA; Uncharacterized protein
TrEMBLA0A2G5F7G91e-133A0A2G5F7G9_AQUCA; Uncharacterized protein
STRINGAquca_002_01300.11e-134(Aquilegia coerulea)
STRINGAquca_064_00017.11e-140(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.17e-84GRAS family protein