PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G283500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 232aa    MW: 27224.2 Da    PI: 4.5375
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G283500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.45.9e-211158249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       +ie+  + +vtf+kRr+g++KKA+ELS+LC+ ++a+++fss+gk y y
  Aqcoe7G283500.1.p 11 KIEDRKKLNVTFTKRRQGLFKKAKELSILCNSQIALLVFSSSGKPYVY 58
                       79*****************************************98866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.142262IPR002100Transcription factor, MADS-box
SMARTSM004329.2E-27261IPR002100Transcription factor, MADS-box
CDDcd001206.34E-25459No hitNo description
PRINTSPR004045.7E-19424IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-22473IPR002100Transcription factor, MADS-box
PfamPF003199.6E-231158IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-192439IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-193960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGKRRRTEIE KIEDRKKLNV TFTKRRQGLF KKAKELSILC NSQIALLVFS SSGKPYVYGD  60
LQNLTNRYYS NSHNFNTIPL SSSSSDDDVV DDEHQTNNNN NNCTITTTES AIEEEEEEEK  120
DEEMNFIAME EEKEKEEEEK DDEIWYWEDA DTMVERIETE VKKIEDRYEL FDVHIGDKRI  180
LTLFTDCDSV MKKWVSELRK ANREKKNGSD RIGYPLIYIG SVRFSCTNYP F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802280.0JX680228.1 Aquilegia coerulea MADS-box protein AGL67 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK7X6P72e-57K7X6P7_AQUCA; MADS-box protein AGL67 (Fragment)
TrEMBLK7XWM92e-56K7XWM9_AQUCA; MADS-box protein AGL66
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-16AGAMOUS-like 29