PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G284000.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ARF
Protein Properties Length: 1109aa    MW: 123610 Da    PI: 6.911
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G284000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.6e-2279180199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae++       + +++  ++lt +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   
  Aqcoe7G284000.2.p  79 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELTARDLHDNAWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI-- 166
                        99*****************************954.4444.48************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++++l+++++r+
  Aqcoe7G284000.2.p 167 RDEKQQLLLGIRRA 180
                        5688889****997 PP
2Auxin_resp120.31.5e-39205288183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldp+rW+nS+Wr+L+
  Aqcoe7G284000.2.p 205 AAHAAANNSPFNVFYNPRASPSEFVIPLAKYYKAVYnNQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPLRWKNSQWRNLQ 288
                        79********************************98799*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.93E-4468208IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-4170194IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-1878170No hitNo description
PfamPF023621.0E-2079180IPR003340B3 DNA binding domain
PROSITE profilePS5086312.02679181IPR003340B3 DNA binding domain
SMARTSM010197.1E-2279181IPR003340B3 DNA binding domain
PfamPF065071.1E-34205288IPR010525Auxin response factor
PfamPF023096.4E-79761062IPR033389AUX/IAA domain
PROSITE profilePS5174528.0939771061IPR000270PB1 domain
SuperFamilySSF542777.19E-79951055No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1109 aa     Download sequence    Send to blast
MKAPATGAML TATANSSEGE RKSINAELWH ACAGPLVTLP PVGSLVVYFP QGHSEQYDKE  60
ALLASDLALK SNKPQTEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF SMQPPAQELT  120
ARDLHDNAWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVLFIRDEK QQLLLGIRRA  180
NRQPTNISSS VLSSDSMHIG ILAAAAHAAA NNSPFNVFYN PRASPSEFVI PLAKYYKAVY  240
NNQVSLGMRF RMMFETEESG TRRYMGTITG ISDLDPLRWK NSQWRNLQVG WDESTAGERR  300
NRVSIWEIEP VAAPFFICPP PFFRSKRPRQ PGMPDDESAD LENLFKRTMP WLGDDICIKD  360
PQSQTAIMPG MSLAQWMNMQ QNPSLSNPAM QPDYMRSLTS PVLQNLAAAD LSRQLGLIGP  420
QALQQNNLQF NTQRPPQQAQ QLDQLPKLPT TLNQLGSLMQ MQQQLDGNGL QQRQNLINQS  480
FSGSHVQAQA QLLQPQVQVQ NNSHQQQSLV QNHQSQPNLQ HNQQQQKQQQ QHQQQQHLHQ  540
QQQQQQQQQQ QQQQQQQQQQ QQQQQQQLQQ QQQQQQLNNA QNQHQNRIPV QHPHQVNQHL  600
QMSEQHVQLL QKLQQQQQSL LSQQSPLQQH PQLTQFQEQQ RQILEMPQNL SNPNSLSQQH  660
MIQQQMMKNN SQQGIGFSNL SQHQSPSKLQ HQHSMLGELP GLVLPHEPTT NMLSTASSGL  720
LVAAGNGGHS VFTEDVPSCS TSPSTNCPNV VQSTINSRIH CSTVIPDEMV QSAGTLLSPS  780
ALEPVSGPSL VKELQSKSDV KPSLPNSKTQ SQGMTSQTYL HAAGQLDYLE ASSSATSVCL  840
SQNDGSLQQN FQLPSFNPQS MLFRETSHDG DVQVDPRNNV LFGVNIDGPL GIPFTPDPLL  900
AKGVGSVKDS PNHLSSGNML TNYGNSKDVQ QELSSSMVSQ SFGVPDLAFN SIDSTISDSG  960
FLNQGPWAPP PQLQRMRTFT KVYKRGAVGR SIDIARYSGY DELKQDLARR FGIEGQLEDR  1020
QRIGWKLVYV DHENDVLLVG DDPWEEFVNC VRCIKILSPQ EVQQMSLDGD LATSVLPNQA  1080
CSSSDGGNAW RNGHCEQNSG NPSGGSYE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1371930945388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263344.10.0PREDICTED: auxin response factor 19-like isoform X1
TrEMBLA0A2G5DL090.0A0A2G5DL09_AQUCA; Auxin response factor
STRINGAquca_018_00174.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19