PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G291700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 167aa    MW: 18938.9 Da    PI: 9.7079
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G291700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.23.3e-211158249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       +ie+  + +vtf+kRr+g++KKA+ELS+LC+ ++a+++fss+gk y y
  Aqcoe7G291700.1.p 11 KIEDRKKLNVTFTKRRQGLFKKAKELSILCNSQIALLVFSSSGKPYVY 58
                       79*****************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.142262IPR002100Transcription factor, MADS-box
SMARTSM004329.2E-27261IPR002100Transcription factor, MADS-box
CDDcd001209.63E-26459No hitNo description
PRINTSPR004042.7E-19424IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-22462IPR002100Transcription factor, MADS-box
PfamPF003195.3E-231158IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-192439IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-193960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MGKRRRTEIE KIEDRKKLNV TFTKRRQGLF KKAKELSILC NSQIALLVFS SSGKPYVYGD  60
LQNLTNRRSW DIEEMLDRTN TVAGLLQGLL VSQTLVSTAV LDEVLVHDFM DSIGLQEYTS  120
PLVAEKPKPL DRRGLECCSN EKFVCFLYYS CSTPSRGLLG VRNRSR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802271e-107JX680227.1 Aquilegia coerulea MADS-box protein AGL66 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DK201e-118A0A2G5DK20_AQUCA; Uncharacterized protein
STRINGAquca_018_00120.11e-119(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.14e-17MIKC_MADS family protein