PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G303300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 245aa    MW: 27695.6 Da    PI: 5.3078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G303300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-135397554
                       HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                       + + Er+RR+++N++++ Lr+++P+ +      K++Ka+i + A+eYI++L
  Aqcoe7G303300.1.p 53 NIISERNRRKKLNERLFALRSVVPNiS------KMDKASIIKDAIEYIQEL 97
                       5578*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-1748112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.4374897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.88E-1252102No hitNo description
PfamPF000102.6E-115397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-1654114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1554103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEYLEEDYNK YWETKMFLQS EELDSWAWDE AFSGYYDSSS PDGAASSSVA AKNIISERNR  60
RKKLNERLFA LRSVVPNISK MDKASIIKDA IEYIQELHEQ EKAIRAEILK LEDERLKNPI  120
PIIDLEINAS QSKTKKKRTS SSSCSSGGTT RSSSIDIVEL RVSYVGEKTL YISLTCDKKT  180
DTMVKLCQVF ESLKLKIITA NITSLSGKLL KTVFVEAEEE EKDQLKLKIE KAIATMSDPQ  240
SPLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-1553127978Transcription factor MYC2
5gnj_B9e-1553127978Transcription factor MYC2
5gnj_E9e-1553127978Transcription factor MYC2
5gnj_F9e-1553127978Transcription factor MYC2
5gnj_G9e-1553127978Transcription factor MYC2
5gnj_I9e-1553127978Transcription factor MYC2
5gnj_M9e-1553127978Transcription factor MYC2
5gnj_N9e-1553127978Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010273597.11e-115PREDICTED: transcription factor bHLH35
SwissprotQ2HIV92e-80BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2G5DJM31e-175A0A2G5DJM3_AQUCA; Uncharacterized protein
STRINGAquca_018_00039.11e-176(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-70bHLH family protein