PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G303900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 191aa    MW: 21885.3 Da    PI: 7.8498
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G303900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.53.7e-11541113798
                        EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        t++ +sg +W+++l  rk ++++ l +GWk+F++ + +++  f++F+++g+ +f   v++++
  Aqcoe7G303900.1.p  54 TVKVPSGSVWNIRL--RKVGNKFCLCDGWKDFADHHSICAWHFLTFRYKGSCSF--DVMICD 111
                        78889*********..*********************************99999..888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-1418120IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00831113IPR003340B3 DNA binding domain
PfamPF023622.3E-845111IPR003340B3 DNA binding domain
PROSITE profilePS508639.99649113IPR003340B3 DNA binding domain
CDDcd100175.16E-1054111No hitNo description
Gene3DG3DSA:2.40.330.107.5E-1454125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-6130178IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-7132179IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.261134190IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MLETPSSHFG DEPSVLLDSF IRLGHISLAP FFVFLYLVPY AVSVINKTKL IIDTVKVPSG  60
SVWNIRLRKV GNKFCLCDGW KDFADHHSIC AWHFLTFRYK GSCSFDVMIC DMSTVEIDYP  120
CKNDDELLIF VQQLPKLFVQ THLPKTLEAA RLIDLEGRTW YLKYNISKQH AYLNQGWKSR  180
VISTTNSNTD *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.12e-14B3 family protein