PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G309900.4.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family SBP
Protein Properties Length: 197aa    MW: 22438.7 Da    PI: 8.3671
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G309900.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP74.91.4e-23148195148
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                        +Cq+egC+ dls+ak+yhrrhkvCe+hska++v++ gleqrfCqqCsr
  Aqcoe7G309900.4.p 148 RCQAEGCKIDLSNAKHYHRRHKVCEFHSKATKVVAGGLEQRFCQQCSR 195
                        6**********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.8E-25142195IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.751146196IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.07E-22147195IPR004333Transcription factor, SBP-box
PfamPF031101.3E-17149195IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MVSYVGLQSN NYKQLWDWET NPYNPNTSTT STTTNGNNNN HNPFITNSTN IFDCSHLSTL  60
PSSSFHGNLN FIPSSQFSEE YPSVDFLKKE GDNAEEFTMD MNNYYNGNGG RIGLNLGHRT  120
YFSSRETALI DRLFRRPRGF YQANQIPRCQ AEGCKIDLSN AKHYHRRHKV CEFHSKATKV  180
VAGGLEQRFC QQCSRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A3e-18149195652squamosa promoter-binding protein-like 12
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026404059.16e-48squamosa promoter-binding-like protein 8
RefseqXP_026457660.17e-48squamosa promoter-binding-like protein 8
TrEMBLA0A2G5DBC71e-146A0A2G5DBC7_AQUCA; Uncharacterized protein
STRINGAquca_024_00116.11e-146(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.22e-32squamosa promoter binding protein-like 8