PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G314200.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bHLH

Protein Properties

Length: 449aa MW: 47356 Da PI: 6.6055

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G314200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.6	1.6e-11	251	296	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Aqcoe7G314200.1.p 251 HSIAERLRRERIAERMKGLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 296 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-16	244	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.83E-12	244	300	No hit	No description
PROSITE profile	PS50888	16.964	246	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-15	248	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.1E-9	251	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-13	252	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MNPMSSINPS RVTLQDLQNN QEQQQQQQQI QNQIQSSSHF DHQTPPDDFL DQMLCNLPWS 60 DLHANNPKSP WVDHLNPQNP NSSNNTSSNN YDDSALLASR LRQHQISGES TKSMLLQQQL 120 LASSRTAASV AGGIGRPSSS SANNSGIGPD SAYLQTIPLT LGNGDSTNGD NSVPGLYNGF 180 TGSLARPSQL ANQHFNHSQN GSISTQNYGA ANTGMNQAPA SGNGNSGGGG GGAPPVRQRV 240 RARRGQATDP HSIAERLRRE RIAERMKGLQ ELVPNANKTD KASMLDEIID YVKFLQLQVK 300 VLSMSRLGGA AAVAPLLADI STEGGADSIQ TNGSGGRSSN GTQTAAINDS LTVTENQVAK 360 LMEEDMGSAM QYLQGKGLCL MPISLASAIS TATNHSSRNP NNNLTNPFLN SNLDGPTSPS 420 ISVLTVQSTM GNGVGETSVR DATSVSKP*

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MNPMSSINPS RVTLQDLQNN QEQQQQQQQI QNQIQSSSHF DHQTPPDDFL DQMLCNLPWS  60
DLHANNPKSP WVDHLNPQNP NSSNNTSSNN YDDSALLASR LRQHQISGES TKSMLLQQQL  120
LASSRTAASV AGGIGRPSSS SANNSGIGPD SAYLQTIPLT LGNGDSTNGD NSVPGLYNGF  180
TGSLARPSQL ANQHFNHSQN GSISTQNYGA ANTGMNQAPA SGNGNSGGGG GGAPPVRQRV  240
RARRGQATDP HSIAERLRRE RIAERMKGLQ ELVPNANKTD KASMLDEIID YVKFLQLQVK  300
VLSMSRLGGA AAVAPLLADI STEGGADSIQ TNGSGGRSSN GTQTAAINDS LTVTENQVAK  360
LMEEDMGSAM QYLQGKGLCL MPISLASAIS TATNHSSRNP NNNLTNPFLN SNLDGPTSPS  420
ISVLTVQSTM GNGVGETSVR DATSVSKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	255	260	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010275766.1	1e-162	PREDICTED: transcription factor bHLH66
Refseq	XP_019055536.1	1e-162	PREDICTED: transcription factor bHLH66
Refseq	XP_019055537.1	1e-162	PREDICTED: transcription factor bHLH66
Swissprot	Q9ZUG9	2e-84	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A2G5DQT5	0.0	A0A2G5DQT5_AQUCA; Uncharacterized protein
STRING	Aquca_016_00200.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-51	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Aqcoe7G314200.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]