PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G316800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 205aa    MW: 23873.2 Da    PI: 4.3321
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G316800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.83.2e-191059249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyey 49
                       +ie    r+vtf+kRr+g++KKA+ LS+LC+a++ +i+fs+  ++++y++
  Aqcoe7G316800.1.p 10 KIEKRESRNVTFCKRRQGLFKKASTLSTLCNANIGIIVFSPsaKNNVYTF 59
                       799999*********************************98335778888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.684161IPR002100Transcription factor, MADS-box
SMARTSM004327.3E-25162IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-24283IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-14323IPR002100Transcription factor, MADS-box
PfamPF003195.9E-211059IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGKRRIAIEK IEKRESRNVT FCKRRQGLFK KASTLSTLCN ANIGIIVFSP SAKNNVYTFG  60
NPSVDKLIDR FYNNQNNNNN NNSVVAVEEE SSENERGFLW WDNIDFSNFD SMEKLKRLET  120
DLMDVKQKVQ NQLEKLINGS SSSPEERVKE EEEESECWLW PSNEDTDTLL NNFDFSEQVA  180
SVSREENQED EELFFDINQY FNYS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802240.0JX680224.1 Aquilegia coerulea MADS-box protein AGL63 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DBK81e-122A0A2G5DBK8_AQUCA; Uncharacterized protein
STRINGAquca_024_00131.11e-122(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.12e-22AGAMOUS-like 91