PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G317100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 209aa    MW: 24290.9 Da    PI: 4.322
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G317100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.44.5e-191059249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyey 49
                       +ie    r+vtf+kRr+g++KKA+ L++LC+a++ +i+fs+  ++++y++
  Aqcoe7G317100.1.p 10 KIEKRESRNVTFCKRRQGLFKKASTLCTLCNANIGIIVFSPsaKNNVYTF 59
                       799999*********************************98335778888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-24162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.109161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-23282IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-14323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-201059IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGKRRIAIEK IEKRESRNVT FCKRRQGLFK KASTLCTLCN ANIGIIVFSP SAKNNVYTFG  60
NPSVDKLIDR FYNNQNNNSV VAVEEESSEN ERGFLWWDNI DFSNFDSMEK LKRLETDLMD  120
VKQKVQNQLE KLINGSSSSP PPSPEERVKE EEEESECWLW PSVEDMDALL NNFDYGEQPT  180
SLCKEENQQD SYDDQELFFD INQYFNYS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802240.0JX680224.1 Aquilegia coerulea MADS-box protein AGL63 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5C4M51e-151A0A2G5C4M5_AQUCA; Uncharacterized protein
STRINGAquca_096_00047.11e-151(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-23AGAMOUS-like 61