PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G319400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family AP2
Protein Properties Length: 558aa    MW: 61106.4 Da    PI: 7.2569
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G319400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.3e-15193252155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Aqcoe7G319400.1.p 193 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 252
                        57*******************666664477446*************************98 PP
2AP247.16e-15295346155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Aqcoe7G319400.1.p 295 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 346
                        57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-17193261IPR016177DNA-binding domain
PfamPF008473.3E-12193252IPR001471AP2/ERF domain
CDDcd000181.95E-22193261No hitNo description
SMARTSM003804.6E-29194266IPR001471AP2/ERF domain
PROSITE profilePS5103219.23194260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-16194260IPR001471AP2/ERF domain
PRINTSPR003672.5E-6195206IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18295356IPR016177DNA-binding domain
PfamPF008477.4E-10295346IPR001471AP2/ERF domain
CDDcd000183.67E-25295356No hitNo description
SMARTSM003801.5E-33296360IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-18296355IPR001471AP2/ERF domain
PROSITE profilePS5103219.045296354IPR001471AP2/ERF domain
PRINTSPR003672.5E-6336356IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MDSSSSAASS QNWLAFSLSH PHHHNHYPPT SDDPVSLYHH HQTFNTTTST TNHHHHSIDS  60
IQPDSTLRND ITTTTTTTTC PLDLSMFSVG PKLEDFLGGG LSSNNTTSLY QFSGENQSEN  120
NNNNNGSSSV VYDSELKSIA ASFLRGYSSS MSTGNNTSSS DHHIDNSAIV PVTAIVPVDS  180
SKKAVDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QSRKGRQVYL GGYDKEEKAA  240
RAYDLAALKY WGPTTTTNFP VCNYEKELDD MKNMTRQEFV ASLRRKSSGF SRGASIYRGV  300
TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV  360
KSIASSSLPI GGITSKPRAS SESDNKSSGD GTRSMEDHPD VTSVSFASPP SSSTTTLSFG  420
IPVKQDATDY WSLLGYQNPL SQNNPSNKNN SNALFQSCLT NGSAGSTYHS SQNMDYSTNS  480
DYINQTRGVL NGGGYVQQQQ QQQSTSIPFV TPISVSSSNS SYDNSTSYGS WVTPSVHAFQ  540
TGKPNISVYQ TPIYGME*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265446.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-157AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2G5C4G00.0A0A2G5C4G0_AQUCA; Uncharacterized protein
STRINGAquca_096_00025.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-139AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]